Research Highlights
News & Insights
North Atlantic right whales are in crisis. There are approximately 356 individuals remaining, and with over 80% bearing scars of entanglements in fishing line, the race to save this species is more critical than ever.
The largest Arctic science expedition in history has ended, with the return of the German icebreaker Polarstern to its home port of Bremerhaven more than one year after it departed Tromso, Norway.
Join us live 8/25-8/27, as WHOI and NOAA scientists partner with Marine Imaging Technologies to explore the living shipwrecks of this marine sanctuary. Send in your questions and have them answered in real time to learn more about the diverse marine communities that call these ships home
Fuels generated from kelp could provide a low-emission alternative to fossil fuels, and WHOI is breeding new strains of kelp and developing autonomous robots to monitor kelp farms
Seals find ease in taking a meal already ensnared in wall-like gillnets cast by fishermen, but at what cost? WHOI biologist Andrea Bogomolni works with the fishing community to record and observe this behavior with the hopes of mitigating marine mammal bycatch
Recent accounts in the media have described the appearance of lion’s mane jellyfish in waters and beaches in the Northeast as a surprising, sometimes troubling, event, with record sizes and numbers reported from Maine to the Massachusetts south coast. But is this event noteworthy? Or, as some have implied, is it a sign of failing ocean health? Three WHOI marine biologists weighed in to put events into perspective.
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David Lamb, a professor of biochemistry and molecular biology at Swansea University in Wales, will conduct research at Woods Hole Oceanographic Institution (WHOI) as part of an All Disciplines Scholar Fulbright Award—one of the most prestigious and selective scholarship programs operating worldwide.
“I am thrilled to receive a prestigious Fulbright award which will enable me to pursue my research goals at one of the world’s leading academic institutions,” Lamb said.
During his Fulbright year at WHOI, Lamb will investigate the gene functions of cytochrome P450 in zebrafish at the Stegeman Laboratory, which focuses on research in biochemical toxicology and the metabolism and effects of pollutants and natural products in marine vertebrates and invertebrates, including deep-sea animals.
“This award to Professor Lamb will be of substantial benefit to his continuing research program in Swansea, and in a mutual way, will help greatly in our search for functions of cytochrome P450s in the zebrafish model,” said John Stegeman, a biologist at WHOI and Lamb’s host sponsor. “His research will focus on a particular gene and protein that we think plays a role in behavioral dysfunction. We are excited about the prospect for success, including understanding the evolution of the gene functions, which may apply to both environmental and biomedical interests.”
Learning more about the functions of cytochrome P450 enzymes, which play key roles in detoxifying contaminants and hormone and vitamin biosynthesis, may have major implications for understanding chemical effects in the sea and in human disease processes. In his studies, Lamb will work together with Stegeman and WHOI biologist Jed Goldstone.
“Seventy percent of protein-coding human genes are related to genes found in the zebrafish and 84% of genes known to be associated with human disease have a zebrafish counterpart,” Lamb said.
Lamb and the other 46 British grantees of the 2016-17 Fulbright cohort celebrated their success as they met U.S. Ambassador Matthew Barzun at his official London residence, Winfield House during a reception to celebrate US-UK exchange programmes on Wednesday, 15 June.
“It’s very rewarding seeing a group of talented, inspirational and very deserving individuals, embark on a life changing trip to the U.S.,” said Amy Moore, Director of the Fulbright Awards Programme. “This year’s cohort are no exception, and have been carefully selected for their impressive accomplishments, academic excellence, and a genuine desire to delve into U.S. culture and collaborate with new people and experience new ideas.”
The U.S.-UK Fulbright Commission is the only bi-lateral, transatlantic scholarship programme, offering awards for study or research in any field, at any accredited U.S. or UK university. The Commission is part of the Fulbright programme conceived by Senator J William Fulbright in the aftermath of World War II to promote leadership, learning and empathy between nations through educational exchange. Award recipients and summer programme participants will be the future leaders for tomorrow and support the “special relationship” between the U.S. and UK.
The Commission selects scholars through a rigorous application and interview process. In making the awards, the Commission looks not only for academic excellence but a focused application, a range of extracurricular and community activities, demonstrated ambassadorial skills, a desire to further the Fulbright Programme and a plan to give back to the recipient’s home country upon returning.
The Woods Hole Oceanographic Institution is a private, non-profit organization on Cape Cod, Mass., dedicated to marine research, engineering, and higher education. Established in 1930 on a recommendation from the National Academy of Sciences, its primary mission is to understand the ocean and its interaction with the Earth as a whole, and to communicate a basic understanding of the ocean’s role in the changing global environment. For more information, please visit www.whoi.edu.
A group of Woods Hole Oceanographic Institution (WHOI) researchers and engineers have developed and tested an innovative new system for sampling small planktonic larvae in coastal ocean waters and understanding their distribution.
Results were published online July 30, 2015 in the Journal of Experimental Marine Biology and Ecology.
Traditionally, pumps and nets are used for sampling plankton, which require sampling at predetermined stations or towing nets behind a ship, followed by visually sorting collected organisms into taxonomic groups. Samples generally combine organisms collected throughout horizontal or vertical tracks, making it impossible to detect small gradations or species-specific patterns in larval distribution.
The sampling system combines three cutting edge technologies—an adapted Suspended Particulate Rosette (SUPR) multi-sampler, a REMUS autonomous underwater vehicle equipped with sensors, and identification of organisms by DNA barcode analysis. They’ve dubbed the new system “SUPR-REMUS.”
“SUPR-REMUS lets us take discrete samples in the water, in a way that nets can’t do in shallow water,” said Annette Govindarajan, lead author on the paper. The new system is already yielding insight into spatial distribution of invertebrate larvae.
The group deployed the vehicle, which they named “SUPR-REMUS,” in Buzzards Bay, Mass., twice during March 2014, when barnacle larvae were abundant. The REMUS 600 carried a CTD sensor to measure and record conductivity, temperature, and depth. The researchers performed genetic barcode analysis of the collected larvae and deduced species distributions.
“Plankton nets that take discrete samples, such as multiple opening-closing systems, are meant for use in open water,” said Govindarajan. “Our goal was to sample in shallow water, and close to the bottom for larvae of coastal benthic invertebrates.”
The researchers targeted barnacles because their reproductive biology is well known, and the scientists knew when and where larvae would be abundant. Adult barnacles are sessile, but the planktonic larvae travel and disperse with water movements. Several barnacle species co-occur in coastal Massachuetts waters, but little is known of how their larvae behave and distribute differently in the water column.
“Traditional sampling doesn’t give us fine-scale information,” said biologist and co-author Jesús Pineda. “Larvae often accumulate in small-scale features such as ocean fronts, where temperature and salinity vary at small distances. We need a sampling device that can resolve these spatial scales and take multiple samples. With this sampler we can initiate autonomous sampling remotely, in response to a change in the environment—such as a change in water temperature—that we suspect initiates larval transport.”
Team members also included WHOI Adjunct Scientist Chip Breier and WHOI Principal Engineer Mike Purcell.
The team modified the SUPR sampler to fit in the front section of a REMUS 600, with additional foam and weights for buoyancy and trim. A flow meter measured seawater volume, which was pumped through external ports at predetermined times, and multiple 200um-mesh filters retained the plankton from separate samples.
On two days in March the team launched the SUPR-REMUS to conduct transects perpendicular to the coastline. On the first mission it traveled from the surface to about 15m. deep in a sawtooth (“yo-yo”) vertical pattern over a 9.9 km distance. The second deployment was more complex: The AUV’s upper and lower track boundaries were programmed relative to the surface and to the sea floor, over a 11.2 km distance.
“The deployments were challenging as the weather at the time was frigid, but we were very pleased with how SUPR-REMUS performed,” said Annette Govindarajan.
Barnacle larvae progress through multiple planktonic stages , termed “nauplii” and “cyprids”, before settling to the bottom. Larvae of different species can appear nearly identical, and traditional identification methods are based on detailed microscopic examination, a process that can take a long time.
Instead, the researchers used genetic barcode analysis, short gene sequences that are diagnostic for numerous invertebrate species. They identified a total of 164 barnacle larvae under a dissection microscope, extracted DNA from the larvae, and used standard techniques to sequence mitochondrial COI genes, often called a barcode sequence. The researchers compared the larval sequences to known sequences published in GenBank and to sequences from local adult barnacles.
They found the barnacle larvae were abundant, up to 950 larvae per cubic meter of water. Larvae were of three species—Amphibalanus sp., Semibalanus balanoides, and Chthamalus fragilis—with Amphibalanus sp. by far the most abundant. The researchers saw some patterns in distribution, but need to conduct a larger survey before drawing conclusions.
Overall, Govindarajan said the project met the primary objective, testing the feasibility of SUPR-REMUS for sampling in coastal waters: “We were thrilled with the first results for robotic sampling coupled with genetic analysis. We got interesting results, learned from it, and plan to deploy again this fall.”
The work was funded internally through the Cecil H. and Ida M. Green Technology Innovation Award and the Alfred M. Zeien Endowed Fund for Innovative Ocean Research. The team has funding from the Massachusetts Institute of Technology Sea Grant Program to use SUPR-REMUS in fall 2015.
The Woods Hole Oceanographic Institution is a private, non-profit organization on Cape Cod, Mass., dedicated to marine research, engineering, and higher education. Established in 1930 on a recommendation from the National Academy of Sciences, its primary mission is to understand the ocean and its interaction with the Earth as a whole, and to communicate a basic understanding of the ocean’s role in the changing global environment. For more information, please visit www.whoi.edu.
Scientists have tested a surprisingly cheap and effective way to assess the health of vulnerable coral reefs and to monitor threats on remote atolls: eavesdropping.
In a study, published Aug. 6, 2015 in Marine Ecology Progress Series, scientists at Woods Hole Oceanographic Institution (WHOI) used low-cost autonomous underwater recorders over four months to collect “soundscapes” of reefs in in the U.S. Virgin Islands. They showed how the collective sound recordings of reef inhabitants painted vivid pictures of the reefs’ abundance and diversity.
In a second study, published the same day in Marine Pollution Bulletin, the researchers recorded boat noise—showing how it could mask vital sounds that organisms make to reproduce, feed, and find new homes. They also demonstrated how underwater recorders could help marine managers keep an ear on potentially disruptive human activity in far-off locations.
“Traditional scientific survey methods require many physical measurements of a region to learn anything about it, and these measurements are often just snapshots,” said Max Kaplan, a PhD student in MIT/WHOI Joint Program in Oceanography and lead author of the two studies. “We’re using a non-invasive, low-cost method – sound collection — to learn a tremendous amount about coral reefs over relatively long periods of time.”
Corals also face threats from warmer temperatures and lower pH conditions in the ocean, and their ecological and economic impacts are huge. Reefs provide habitats for 25 percent of all marine species and play a key role protecting shorelines from storm damage. The commercial value of U.S. fisheries from coral reefs is more than $100 million annually and about $5.7 billion worldwide, according to the National Oceanic and Atmospheric Administration, and they are a key driver of tourism jobs and revenue.
Sounds fishy, in a good way
Waves, winds, and animal sounds, make coral reefs noisy places. Many know the melodic calls of dolphins and whales, but those aren’t the only creatures causing a racket. Tiny shrimp, ubiquitous throughout the tropics, crackle like bacon frying. Fish “drum” their swim bladder, gnaw on coral, flick their tails, and even strum their own tendons like a guitar. Animals use sounds to track mates, defend territory, or coordinate a spawning events between males and females.
To acoustically spy on these creatures, the WHOI team set up autonomous underwater recording devices on three reefs in U.S. Virgin Islands National Park from April to August in 2013. The researchers chose reefs with varying degrees of coral cover and fish density to see if they could hear the differences in the reefs. On each reef, one type of moored recorder sampled for 2.5 minutes every two hours, while another type recorded for 60 seconds at 20-minute intervals.
“The question was, can you use sound as sort of a proxy measurement of coral reef biodiversity?” said Kaplan.
The answer was yes—but only when researchers listened to the right animals and during very particular times of day. “That was something that we didn’t really expect,” said Kaplan.
Like some birds, the fish were more active, and vocal, when the light was changing at dawn and at dusk, so it was only around these hours that fish noises predicted reef health. Other studies have shown that peak calling times can vary from region to region—at midnight on the Great Barrier Reef, for example.
“It really underscores the need for long-duration monitoring records,” Kaplan said. “Let’s say we had just recorded at noon every day—we probably wouldn’t have seen the differences among the reefs.”
The ability to correlate fish sounds with reef health could revolutionize how and how often we can monitor coral reefs. “It’s a pretty exciting result that we found, because many reefs are difficult to access and it is very expensive to monitor them in traditional ways,” Kaplan said.
“Instead, we can deploy these relatively cheap recorders and have the sounds in the sea constantly assessing the biodiversity for us, both in real time and over time,” said WHOI biologist Aran Mooney, Kaplan’s Ph.D. advisor and co-author of the studies.
Take, for example, warming seawater temperatures that can cause corals’ colorful symbiotic algae to depart, revealing the corals’ underlying white skeletons. This phenomenon, known as bleaching, can cause corals to starve and die.
“If we want to know if a bleaching event is occurring, we can potentially hear those changes because the fish leave or shift or don’t appear on the sound records,” Mooney said.
Reef sound recordings could also be used to build a reef. Coral and fish larvae spend their early life out in ocean and at the whim of the currents, but when they are ready to settle, it is thought they actually listen for the sound of a healthy reef to pick their homes. “If you want to restore a reef that has bleached, you could potentially broadcast some of these sounds and attract the larvae you want to bring back,” Mooney said.
Co-authors on the study include WHOI Research Engineer Jim Partan and WHOI Senior Scientist Andrew R. Solow, director of the WHOI Marine Policy Center.
The loudest visitors
On the other hand, scientists suggest that other types of sound, including boat noise, can affect larval behavior and impede settling on reefs, where there is already concern about declining recruitment and coral or fish abundances.
In their study in Marine Pollution Bulletin, Kaplan and Mooney found vessel noise in about 10 percent of their recordings. The noise increased the ambient soundscape by about 7 decibels.
“Most of this noise was low-frequency noise, and this is actually the frequency in which fish communication takes place,” Kaplan said.
The overlapping boat noise “might be an important impediment for fish that don’t produce very loud sounds and don’t hear all that well,” Mooney said.
While noise pollution has been studied for large vessels in the open ocean, “there isn’t a lot of information about small-vessel noise and the influence this might have on coastal habitats, which account for so much fishing, tourism, and storm protection,” Kaplan said.
The study points to a new way to get urgently needed data on the impacts of noise on coastal ecosystems—a field still in its infancy. It also points to a new means to protect our reefs. Using these low-cost recorders, marine managers could monitor remote reefs or atolls, where stationing someone is difficult; or marine protected areas that are off limits to fishing; or places such as the U.S. Virgin Island National Park, where boaters pay for the right to use moorings within the park. Boat noise monitoring recordings could also help create a quantifiable metric for ecosystem services such as recreation.
The WHOI researchers have already begun a larger version of the Virgin Islands study in Hawaii. They will monitor sound for 15 months in eight sites, with coral coverage ranging from 85 percent to almost none.
The research was funded by Mitsubishi Corporation Foundation for the Americas and the WHOI Access to the Sea fund.
The Woods Hole Oceanographic Institution is a private, non-profit organization on Cape Cod, Mass., dedicated to marine research, engineering, and higher education. Established in 1930 on a recommendation from the National Academy of Sciences, its primary mission is to understand the ocean and its interaction with the Earth as a whole, and to communicate a basic understanding of the ocean’s role in the changing global environment. For more information, please visit www.whoi.edu.
A research team has successfully demonstrated a new non-invasive tool to obtain hard-to-get health measurements of large endangered whales in the wild: Using a small remote-controlled hexacopter, scientists for the first time collected both breath samples from the whales’ spouts combined with aerial photos of their body condition.
With breath samples, scientists can analyze whales’ DNA, hormones, and bacteria for things such as family history, stress levels, and health. The high-resolution photos provide researchers with a way to assess general health and body condition such as fat level and skin lesions.
Scientists at Woods Hole Oceanographic Institution (WHOI) and the National Oceanic and Atmospheric Administration (NOAA) used the small (32-inch-diameter), 6-rotor hexacopter in an experiment in July 2015 on humpback whales in Stellwagen Bank National Marine Sanctuary off New England. Rigged with a specialized camera system, the unmanned airborne vehicle flew 125 to 150 feet above sea level to get full-body photographs of 36 animals. It swooped down to 10 feet above seal level to collect 20 breath samples from 16 whales.
The breath samples will be analyzed to find the assemblage of microorganisms in the whales’ respiratory tracts, the most common source of cetacean disease. The scientists plan to use the hexacopter next winter to collect breath samples from the same whale species living near the Antarctic Peninsula. They will compare the samples from animals living in relatively pristine conditions there with those from animals in Stellwagen, which has more ship traffic, fishing, and pollution. Dr. Moore suggested “this will give us a new understanding of the relationship between whale body condition and health in the context of habitat quality.”
The scientific team included Michael Moore, director of the WHOI Marine Mammal Center at WHOI, WHOI microbiologist Amy Apprill and post doctoral scholar Carolyn Miller; biologist John Durban and biologist Holly Fearnbach of NOAA’s Southwest Fisheries Science Center, biologist Jamison Smith of NOAA’s Greater Atlantic Regional Fisheries Office, and biologist David Wiley of NOAA Stellwagen Bank National Marine Sanctuary. The research was funded by the WHOI Ocean Life Institute.
The Woods Hole Oceanographic Institution is a private, non-profit organization on Cape Cod, Mass., dedicated to marine research, engineering, and higher education. Established in 1930 on a recommendation from the National Academy of Sciences, its primary mission is to understand the ocean and its interaction with the Earth as a whole, and to communicate a basic understanding of the ocean’s role in the changing global environment. For more information, please visit www.whoi.edu.
NOAA researchers and colleagues from the Woods Hole Oceanographic Institution (WHOI) have reported what appears to be a banner year for young sea scallops off the Delmarva Peninsula in mid-Atlantic waters of the U.S.
NOAA’s HabCamV4, a towed imaging and sensor platform, has photographed miles of sea bottom packed with as many as 350 sea scallops in less than 1 square meter (less than three square feet). Other colorful images captured by the HabCam showed swimming scallops, sea stars and crabs—both scallop predators—and many species of fish, squid and sponges.
“The images are amazing, and we have not seen densities like this since 2003,” said Deborah Hart, a mathematical biologist at the Woods Hole Laboratory of NOAA’s Northeast Fisheries Science Center (NEFSC) who also leads the agency’s sea scallop stock assessment effort. “One scallop per image is considered high density, so seeing hundreds in an image is really exciting, and potentially very good news for future harvests.”
The findings were made during the annual federal sea scallop resource survey conducted on the 146-foot research vessel Hugh Sharp, operated by the University of Delaware. The survey used NOAA’s HabCamV4, a towed platform equipped with stereo cameras and strobes, side-scan sonar, a plankton microscope, and a variety of environmental sensing instruments. It operates throughout the sea scallop fishing grounds from the Mid-Atlantic Bight to Georges Bank. The HabCamV4, developed at WHOI, is a sophisticated Habitat Camera Mapping System. WHOI scientists, Scott Gallager and Amber York are aboard the Sharp for the survey as research collaborators.
NOAA’s HabCamV4 is towed behind the Sharp at around 6 knots (about 7 miles per hour) about two meters (roughly 6 feet) above the sea floor. It takes six overlapping images every second to create a continuous mosaic of the ocean floor over many miles in great detail. Computer servers on the vessel store the images and environmental data from the sensors on the HabCam, along with information from the ship’s computer systems about its location, speed and other operating details. One in every 50 images is annotated manually, meaning scallops, fish and other organisms and the habitat in that image are described on a computer file, while every image is classified automatically using machine vision tools, explained Gallager.
“We’re seeing many swimming scallops and other behaviors that are providing insights into how the animals live and interact in that environment,” Hart said. “Baby scallops are seen attached to adults, and other scallops are swimming above the bottom, perhaps to diffuse to areas that are less dense and provide more room to grow.”
“Swimming scallops—particularly young ones—are known to occur due to the presence of predators, but some of these scallops were over one meter (about three feet) off the bottom without any predators in the area. This means that there is a tremendous potential for transport in the water column once they leave the bottom,” added Gallager, a biologist at WHOI and principal developer of HabCamV4.
“The stereo imaging capability on HabCamV4 is allowing us to measure precisely the size of the scallops regardless of their orientation, their altitude off the bottom, and swimming attack angle. Knowing the altitude and attack angle, we can predict their swimming speed and how far they may be carried by the currents,” Gallager said. “It may very well be that swimming is the main mechanism for post-settlement dispersal, and that is what controls where we see scallops downstream of such events.”
The NEFSC’s annual sea scallop survey is conducted in three segments or “legs,” each ranging from 11 to 14 days, between May and July, beginning with the Mid-Atlantic Bight, then Southern New England and ending on Georges Bank. The Hugh Sharp departed the NEFSC’s Woods Hole Laboratory for the Georges Bank leg on June 11 and returned to port June 24. HabCamV4 is used alongside an 8-foot scallop dredge, which collects physical samples of the scallops.
“Leg one in the Mid-Atlantic was all HabCam all the time,” Hart said, noting that nearly four million images were taken in just two weeks. The Virginia Institute of Marine Science (VIMS) is conducting a fine-scale industry-based dredge survey of the entire Mid-Atlantic scallop resource area, in a project funded through the 2015 scallop research set-aside program. The research set-aside program, in which a portion of the annual quota is set aside to support research important to the fishery, is unique to the Northeast.
Commercial scallop vessels are being used as the platform for the VIMS work. “We have completed two of the three legs and are now on the third,” said Dave Rudders of VIMS and lead scientist on the dredge survey. “Preliminary results from our dredge survey suggest a widespread recruiting year class of scallops distributed broadly throughout the survey area. The locus of the event is in the Elephant Trunk area, which is what the HabCam survey of that area is confirming visually.”
Legs two and three of the NEFSC scallop survey are a combination of HabCam tows and scallop dredging, with another two million images collected on each of those legs. Using the dredge and HabCam methods in tandem increases both survey efficiency and the accuracy of estimated scallop biomass. Unlike a dredge, which only captures some of the scallops it travels over, a camera can reveal all the scallops.
The HabCam (Habitat Mapping Camera System) concept was developed jointly by scientists and engineers at WHOI with commercial fishermen and input from the NEFSC. It has been funded at different stages in its development by NOAA Fisheries, the scallop industry’s Scallop Research Set-Aside Program, the Northeast Consortium, and NOAA’s Integrated Ocean Observing Systems program. HabCamV4 was a collaborative effort between the NEFSC, NOAA Fisheries and the WHOI HabCam Team to develop a tool that could survey sea scallops as well as provide quantitative information about habitat and the marine ecosystem. It was first used in 2012 on the annual sea scallop survey and has also been used by the NEFSC to survey yellowtail flounder, black sea bass habitat, and potential sites for offshore wind farms in the Mid-Atlantic area.
The Woods Hole Oceanographic Institution is a private, non-profit organization on Cape Cod, Mass., dedicated to marine research, engineering, and higher education. Established in 1930 on a recommendation from the National Academy of Sciences, its primary mission is to understand the ocean and its interaction with the Earth as a whole, and to communicate a basic understanding of the ocean’s role in the changing global environment. For more information, please visit www.whoi.edu.
New England’s spring and summer red tides will be similar in extent to those of the past three years, according to the 2015 Gulf of Maine red tide seasonal forecast. The forecast is the eighth seasonal Gulf of Maine red tide forecast funded by NOAA and issued by scientists from the Woods Hole Oceanographic Institution and North Carolina State University.
The forecast is part of a larger NOAA effort to deliver ecological forecasts that support human health and well-being, coastal economies, and coastal and marine stewardship.
Red tide, a type of harmful algal bloom (HAB) caused by the alga Alexandrium fundyense, produces a toxin that can lead to paralytic shellfish poisoning, which can result in serious or even fatal illness in humans who eat contaminated shellfish. In 2005, an unusually large red tide event caused $23 million in lost shellfish sales in Massachusetts and Maine.
States in affected areas conduct rigorous monitoring of toxin levels in shellfish and, when necessary, ban harvesting to protect human health. The seasonal forecast, which is generated by modeling how algal cysts will respond to predicted ocean conditions, is used to guide the state monitoring.
Woods Hole will also maintain three robotic HAB sensors called environmental sample processors (ESPs) at locations along the Maine coast throughout the spring and summer. This is the first year the Maine Department of Marine Resources (DMR) will provide their direct measurements of shellfish toxicity to researchers for comparison with estimates derived from near-real time ESP data on Alexandrium cells to try to predict toxicity in shellfish.
“We are working with the researchers at Woods Hole to further explore the relationship between the direct shellfish toxicity measurements onshore and the predictions of toxicity from the ESPs located offshore,” said Kohl Kanwit, director of the Bureau of Public Health for the Maine DMR. “The ESPs are not a replacement for state-run programs that monitor naturally occurring marine toxins in shellfish, but they can possibly increase our program efficiency in the future by providing automated data collection that can inform on-the-ground decision making.”
“This partnership on the Gulf of Maine seasonal HAB forecast and use of ESPs to detect toxic red tide offshore are examples of NOAA’s role in improving ecological forecasting capabilities along our coasts,” said Holly Bamford, Ph.D., assistant NOAA administrator for NOAA’s National Ocean Service performing the duties of the assistant secretary of commerce for conservation and management. “Advance warning of toxic HAB events enables proactive actions to protect coastal economies, making the region more resilient to red tide outbreaks.”
In addition to the seasonal forecast, NOAA funds Woods Hole and North Carolina State University to issue weekly updates throughout the bloom season. Updates report bloom extent, trajectory, and intensity. Scientists also report cell abundance and toxin concentrations transmitted in real-time from ESPs strategically placed offshore of shellfish beds. NOAA and Woods Hole developed the toxin detection sensors. Updates are distributed to more than 150 coastal resource and fisheries managers in six states as well as federal agencies such as NOAA, the Food and Drug Administration and the Environmental Protection Agency. Summaries are available at http://www.whoi.edu/northeastpsp/.
Participants in the effort to build a Gulf of Maine HAB forecasting and observing system include: Woods Hole Oceanographic Institution, NOAA’s National Centers for Coastal Ocean Science (NCCOS), NOAA’s Integrated Ocean Observing System program, NOAA’s Office of Coast Survey, NOAA’s Center for Operational Oceanographic Products and Services, NOAA’s Northeast River Forecast Center, North Carolina State University, the University of Maine, the Monterey Bay Aquarium Research Institute, the Northeastern Regional Association of Coastal and Ocean Observing Systems, and the states of Maine, Massachusetts and New Hampshire.
NCCOS funding is supporting the transition of HAB forecasts and sensors to operations. Additional support has been provided by provided by U.S. Environmental Protection Agency, Woods Hole Center for Oceans and Human Health through funding from the National Science Foundation and the National Institute for Environmental Health Sciences, the Environmental Protection Agency, the Massachusetts Institute of Technology Sea Grant Program, and Tom and Robin Wheeler.
NOAA’s mission is to understand and predict changes in the Earth’s environment, from the depths of the ocean to the surface of the sun, and to conserve and manage our coastal and marine resources. Join us on Twitter, Facebook, Instagram, and our other social media channels.
The Woods Hole Oceanographic Institution is a private, non-profit organization on Cape Cod, Mass., dedicated to marine research, engineering, and higher education. Established in 1930 on a recommendation from the National Academy of Sciences, its primary mission is to understand the ocean and its interaction with the Earth as a whole, and to communicate a basic understanding of the ocean’s role in the changing global environment. For more information, please visit www.whoi.edu.
The Woods Hole Oceanographic Institution (WHOI) in collaboration with the Ocean Explorium in New Bedford, Mass., has created new digital content for museum-based spherical display systems that brings high-definition images and video of dynamic, deep ocean ecosystems to the public.
The “Global Viewport for Virtual Exploration of Deep-Sea Hydrothermal Vents” is an interactive educational program that connects the public with these remote yet vital ecosystems using the Science On a Sphere® (SOS) digital globe that projects the global datasets and imagery onto a room-sized globe. SOS systems are installed at more than 100 science museums in 20 countries around the world, and provide museum visitors with a large-scale view of global environmental phenomenon. SOS was developed by researchers at the National Oceanic and Atmospheric Administration (NOAA). Utilizing computers and multiple video projectors, the audience can see animated images that explain complex environmental processes in an intuitive and captivating way.
“The amazing footage in this new digital program will help the public see how these deep ocean ecosystems have an impact on the planet, and on them,” said Stace Beaulieu, a WHOI research specialist and the principal investigator for the project funded by the National Science Foundation.
Striking images from the deep sea in National Geographic magazine inspired Beaulieu as a young child to become a deep-sea biologist. That experience made her believe in the power of informal science education to inspire the next generation of explorers and oceanographers.
For this project, Beaulieu collaborated with musem educators at the Ocean Explorium to develop two movies for the spherical display system: “Life Without Sunlight” and “Smoke and Fire Underwater.” The movies are intended engage the public and also to help teachers and other educators to advance their students’s understanding of Earth science and ocean literacy principles. The films focus on hydrothermal vents, which are like underwater hot springs located mainly along Earth’s plate boundaries at depths as deep as 5000 meters (3 miles) below the ocean surface. These vents spew iron and sulfur-rich minerals and super-heated water up to 760 degrees Fahrenheit.
Deep-sea hydrothermal vents were first discovered in 1977, and since then about 200 have been observed. Over the last four years, Beaulieu developed an open-access database of hydrothermal vents around the world called the InterRidge Global Database of Active Submarine Hydrothermal Vent Fields, which is used by the scientific community.
“Hydrothermal vents are the expression of this larger circulation of water that goes between the ocean and the Earth. The vents are basically outputting chemicals from inside the Earth and creating a chemical balance for our oceans,” she said. “They provide Earth with diverse life forms that aren’t found anywhere else.”
To test the effectiveness of the Global Viewport program in educating and inspiring students and museum-goers, the project team hosted two family science nights and a teacher workshop at the Ocean Explorium, with participants providing measurable feedback following their experience with the exhibit. Response was overwhelmingly positive – success Beaulieu attributes to the tight collaboration between scientists, educators, and graphic artists in developing the content for public audiences. Results for the formal evaluation will be revealed at the America Geophysical Union’s Fall Meeting in San Francisco, on December 18, 2014.
“Not many people get the chance to experience what it’s like to dive in a submersible to the seafloor,” said Beaulieu, who has had 13 dives in the Alvin submersible. “But I can tell you, the way this spherical display system projects imagery on the globe right in front of you, it is actually like looking through the viewport of Alvin. I think it’s an effective way to excite the public about the deep ocean environment.”
The “Global Viewport for Virtual Exploration of Deep-Sea Hydrothermal Vents” is now available through the Woods Hole Open Access Server and NOAA’s Science On a Sphere® program.
The National Science Foundation’s Directorate of Geosciences (GEO) supported this project.
The Woods Hole Oceanographic Institution is a private, non-profit organization on Cape Cod, Mass., dedicated to marine research, engineering, and higher education. Established in 1930 on a recommendation from the National Academy of Sciences, its primary mission is to understand the ocean and its interaction with the Earth as a whole, and to communicate a basic understanding of the ocean’s role in the changing global environment. For more information, please visit www.whoi.edu.
Woods Hole Oceanographic Institution (WHOI), as a part of the Stantec Team, has been selected by an interagency scientific review panel to lead a long-term scientific study of the Arctic marine ecosystem along the Beaufort Sea shelf from Barrow, Alaska, to the Mackenzie River delta in Canadian waters.
The Marine Arctic Ecosystem Study (MARES) stems from increased attention in the Arctic region to climate change, energy development, and sustainability. Information gained will aid government, industry, and communities in making decisions related to regulations, resource management, economic development and environmental protection issues.
WHOI scientists, as well as partners from more than 25 universities, environmental research organizations, private consulting firms, and independent scientists will be involved in the study.
“We are delighted to be participating in this innovative and ambitious project,” says Carin Ashjian, a senior scientist and project lead at WHOI. “The Beaufort Sea is vulnerable to ongoing climate and environmental change. It’s exciting to be part of a collaborative team that includes academic and industry scientists to advance our understanding of the ecosystem processes in this region and contribute to the models that can help society plan for and mitigate changes.”
Public/Private Partnership
MARES is an integrated ecosystem research initiative coordinated and planned by Bureau of Ocean Energy Management (BOEM), a bureau of the Department of the Interior, in conjunction with its federal and private sector research partners: U.S. Arctic Research Commission, U.S. Coast Guard, U.S. Geological Survey, U.S. Integrated Ocean Observing System, Marine Mammal Commission, National Science Foundation, National Oceanic and Atmospheric Administration, Office of Naval Research, and Shell Oil Company.
“BOEM is pleased to join our Federal and industry partners to undertake this forward-looking project,” said BOEM Acting Director Walter Cruickshank. “With widespread interest in the Artic, including potential oil and gas leasing and development, we’re looking to significantly expand our knowledge of the Beaufort Sea ecosystem to inform our decision-making.”
Study Goals
The overarching goal of the study is to better understand the interrelationships of the physical, biological, chemical and human systems, including traditional knowledge, of the Beaufort Sea and to advance scientific prediction capabilities for linkages between marine life, human uses, sea ice, atmospheric and oceanic processes and river discharge.
The research is being undertaken under the National Oceanographic Partnership Program (NOPP), which leverages resources from federal agencies, academia, industry and non-governmental organizations to support ocean research. It is important for BOEM and its NOPP partners to study and monitor areas known for high biological productivity and prevalent subsistence use to ensure their protection.
Over the course of the study, the team will use multiple sampling platforms, including ships, drones, satellites, and snow machines; multiple sampling techniques such as ice and snow sensors, acoustics and nets and multiple ocean, ice and air modeling approaches.
The study results will inform several research areas including environmental protection, climate change, food security, biodiversity, exploration and discovery and ecosystem services (the contributions that a biological community and its habitat provide to our day to day lives). An independent review board of internationally recognized experts will help steer and peer review the five-year project.
About Woods Hole Oceanographic Institution
The Woods Hole Oceanographic Institution is a private, non-profit organization on Cape Cod, Mass., dedicated to marine research, engineering, and higher education. Established in 1930 on a recommendation from the National Academy of Sciences, its primary mission is to understand the ocean and its interaction with the Earth as a whole, and to communicate a basic understanding of the ocean’s role in the changing global environment. For more information, please visit www.whoi.edu.
About Stantec
We’re active members of the communities we serve. That’s why at Stantec, we always design with community in mind.
The Stantec community unites more than 14,000 employees working in over 230 locations. Our work—professional consulting in planning, engineering, architecture, interior design, landscape architecture, surveying, environmental sciences, project management, and project economics—begins at the intersection of community, creativity, and client relationships. With a long-term commitment to the people and places we serve, Stantec has the unique ability to connect to projects on a personal level and advance the quality of life in communities across the globe.
About BOEM
BOEM promotes energy independence, environmental protection and economic development through responsible, science-based management of offshore conventional and renewable energy and marine mineral resources. BOEM’s Environmental Services Study Program (ESP) develops, funds, and manages rigorous scientific research to inform policy decisions regarding the development of energy and mineral resources on the Outer Continental Shelf.
Contacts
Stephanie Murphy
WHOI Media Relations Manager
Ph: (508) 289-3340
Cell: (508) 566-3055
media@whoi.edu
Alison Smith
Stantec Media Relations/US
Ph: (617) 654-6062
Cell: (978) 727-7097
Rachel Sa
Stantec Media Relations/Canada
Ph: (416) 598-5699
Cell: (416) 902-0930
Marjorie Weisskohl, APR
Public Affairs Specialist
Bureau of Ocean Energy Management
U.S. Department of the Interior
Ph: (703) 787-1304
Thought to dwell mostly near the ocean’s surface, Chilean devil rays (Mobula tarapacana) are most often seen gliding through shallow, warm waters. But a new study by scientists at Woods Hole Oceanographic Institution (WHOI) and international colleagues reveals that these large and majestic creatures are actually among the deepest-diving ocean animals.
“So little is known about these rays,” said Simon Thorrold, a biologist at WHOI and one of the authors of the paper, published July 1, 2014, in the journal Nature Communications. “We thought they probably travelled long distances horizontally, but we had no idea that they were diving so deep. That was truly a surprise.”
Researchers utilized pop-up satellite archival transmitting tags to record the movement patterns of 15 Chilean devil rays in the central North Atlantic Ocean during 2011 and 2012. The tags, which stay on the animals for up to 9 months, also measure water temperature, depth, and light levels of the waters. Once the tags pop off, they float to the surface and beam data via the ARGO satellite system back to computers on shore.
“Data from the tags gives us a three-dimensional view of the movements of these animals, and a window into how they’re living in their ocean habitat—where they go, when, and why,” Thorrold added.
Devil rays, which can grow as large as four meters (13 feet) across, are ocean nomads travelling large areas of the ocean. Dive data from the tags showed individuals also routinely descended at speeds up to 6 meters per second (13.4 miles per hour) to depths of almost 2,000 meters (1.24 miles) in water temperatures less than 4 degrees Celsius (39.2 degrees Fahrenheit).
The deep dives generally followed two distinct patterns. The most common involved descent to the maximum depth followed by a slower, stepwise return to the surface with a total dive time of 60 to 90 minutes. The tagged rays generally only made one such dive during a 24-hour period. In the second dive pattern, individuals descended and then remained at depths of up to 1,000 meters (3,280 feet) for as long as 11 hours.
During the day, the rays would spend time up at the surface—presumably heating up—immediately before, and then again, after a deep dive. How else might these animals be dealing with the cold temperatures of the deep ocean?
A previous study in the 1970s found that several species of devil rays possess a physiological adaptation —well-developed blood vessels around the cranial cavity that essentially serve as heat exchange systems. At the time, it was hypothesized that the rays must be using this adaptation to cool down rather than warm up.
“Rays were always seen in very warm water up at the surface, so why would they need an adaptation for cold water? Once we looked at the dive data from the tags, of course it made perfect sense that the rays have these systems. Sometimes they’re down diving for two or three hours in very cold water — two to three degrees Celsius (35.6 to 37.4 degrees Fahrenheit),” Thorrold said.
While it’s not certain what the rays are doing at these depths, the dive profiles suggest that they’re foraging on large numbers of fish that live in deeper waters.
“There’s an enormous amount of biomass in the deep ocean that we’re only starting to understand the significance of,” said co-author Camrin Braun, a graduate student in the MIT/WHOI Joint Program in Oceanography. “This paper suggests that devil rays are aware of and regularly exploit this resource, which demonstrates an unexpected new link between the surface and deep ocean.”
Devil rays are coming under increasing pressures from fishing, particularly in the Indian and Pacific Oceans. Manta gill rakers are targeted for Chinese medicine, and their cartilage is used as filler in shark fin soup.
“Ultimately, answering whether these animals depend on the deep layers of the ocean for their feeding and survival could have major implications for their management and that of oceanic habitats,” added co-author Pedro Afonso, a researcher at the Institute of Marine Research (IMAR) at the University of the Azores and the Laboratory of Robotics and Systems in Engineering and Science (LARSyS).
Little is known about the life span of devil rays or at what age they reproduce. Like other large rays, devil rays are thought to have just one pup born per litter about every two years.
“With those kinds of low reproductive rates, any type of mortality is going to have a big impact on the species,” Thorrold said. “We don’t know enough about devil rays to even know if we should be worried about their status. There are lines of evidence to suggest we ought to be worried, or at least that we should be trying to learn more about the biology and ecology of these rays.”
Researchers from the King Abdullah University of Science and Technology (KAUST) and Massachusetts Marine Fisheries also contributed to the study. Funding for this research came from the National Science Foundation, The Harrison Foundation, Rodney and Elizabeth Berens, the King Abdullah University of Science and Technology, Portuguese Foundation for Science and Technology/ Ministry of Education and Science, the LARSyS Strategic Project, and WHOI.
The Woods Hole Oceanographic Institution is a private, non-profit organization on Cape Cod, Mass., dedicated to marine research, engineering, and higher education. Established in 1930 on a recommendation from the National Academy of Sciences, its primary mission is to understand the ocean and its interaction with the Earth as a whole, and to communicate a basic understanding of the ocean’s role in the changing global environment. For more information, please visit www.whoi.edu.
Oceanus Magazine
Experts Explore the Ocean-Human Health Link
November 9, 2020

Eleonora Van Sitteren
Guest Student, Lindell Lab
I work with the Lindell Lab group at WHOI on a selective breeding program with sugar kelps. These can be used as a carbon-neutral, sometimes even carbon-negative, highly nutritious food source, as well as a promising biofuel.
To make the farming process more efficient, the lab is tracking the genetics of the algae. But to farm kelp, you need something for it to attach to and grow on. However, not all life stages of kelp are able to adhere to these substrates as others can. So, my job is to figure out a better binder (glues, basically) that will help algae attach and allow them to grow.
Even if we fish more of the already depleted wild stocks out there, we will still need more food in the future to feed the growing global population. A lot of ocean space along the coast can be used to grow algae, which not only provides an important source of food but also improves the water quality and helps reduce the production of global carbon dioxide.
Interviewed by Daniel Hentz

Nadja Brun
Environmental Toxicologist, Postdoc, Stegeman Lab
In my research, I study how exposures to chemical pollutants called polychlorinated biphenyls, or PCBs, induce neurological disease. We just add PCBs to water in experiments with zebrafish. We can look at how these toxicants influence the development of the nervous system and fish behavior.
Many people don’t make the connection between studying fish and biomedical research, but to me, it’s obvious. A few years ago, scientists sequenced the whole genome of zebrafish. That’s when we realized how similar they are to humans. The researched showed that we share more than 80% of genes involved with diseases. And zebrafish have a major advantage: They develop externally. That means we can observe how they grow from a single cell to a fish that can hunt and avoid predators in just five days. And because the larvae are transparent, it’s easy to image cells and organs. We can make nerve cells, for example, fluorescent and examine whether they develop properly under the microscope.
Interviewed by Lexi Krupp

Neel Aluru
Associate Scientist, Biology
I study how juvenile organisms’ exposure to environmental stressors–things like manmade pollutants or toxins– can impact the risks of developing adverse health conditions as adults. In particular, I look at the packaging of DNA in the nucleus—a process known as epigenetics—and how it is involved in mediating these toxic effects. If you think of DNA like a piano, the pianist is the epigenetic process that determines which notes are played, or how genes are expressed. While epigenetic changes are part of normal development, environmental factors also have the power to impair an organism’s overall health. In humans, these variations have been linked to illnesses, such as Alzheimer’s disease and other neurodegenerative disorders.
We use zebrafish as a model because of its short generation time, which allows us to study the long-term and multi-generational effects of toxins within shorter timeframes. Understanding the effects and processes by which toxins alter their health is critical to determining the risks posed by environmental chemicals to human health.
Interviewed by Lexi Krupp

Svenja Ryan
Physical Oceanographer, Postdoc, Ummenhofer Lab
As a physical oceanographer, I often have people ask me, “So how does your research affect my life right now?” Often, you can’t say anything other than, “It might affect your life in 50-100 years.” But with marine heatwaves, the current subject of my research at WHOI, you can draw more immediate connections to society.
Similar to atmospheric heatwaves, these are discrete events where regions of the ocean experience above-average temperatures (sometimes lasting years). A few of these events have had drastic effects on the ecosystems that give us food and support our economies. Just off our doorstep in New England in 2012, there was an unprecedented marine heatwave that led to massive problems in the local lobster fishery. Because temperatures started to warm up very early in the season, the lobster landing came unexpectedly. The supply chain couldn’t handle it, and the price of lobster dropped precipitously, throwing the whole economy for a loop.
In a way, these phenomena give us a glimpse at a more permanent future if we don’t manage the effects of climate change.
Interviewed by Daniel Hentz
Biology WHOI Perspectives Pollution