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2025 Potential Projects

Below is a list of potential projects and advisors in the WHOI departments and the USGS Coastal and Marine Science Center for Summer 2025. This list is not comprehensive; other Scientific and Senior Technical Staff are eligible to advise Summer Student Fellows. See also: WHOI Areas of Research and Departments, Centers and Labs.

Potential projects for 2026 posted here.

Applied Ocean Physics and Engineering Dept.

Ocean Acoustics and Signal Processing

Julien Bonnel Read more

 

AI and ML guided behaviors for underwater robots

Yogesh Girdhar Read more

 

Groundwater–ocean interactions from pole to pole

Julia Guimond Read more

 

Applied Aquaculture

Scott Lindell Read more

 

Sea Ice Physics and Ice-Ocean-Climate Interactions

Ted Maksym Read more

 

Development of In situ Chemical Sensors

Anna Michel Read more

 

Passive Acoustics for Marine Conservation and Fisheries Management

Xavier Mouy Read more

 

Sea ice-ocean interactions in observations and climate models

Maddie Smith Read more

 

Autonomous Surface Vessel Development

Peter Traykovski Read more

 

Antarctic ice-ocean interactions using satellite remote sensing

Catherine Walker Read more

 

Ocean Currents and Biological Impacts

Weifeng (Gordon) Zhang Read more

 

Biology Dept.

Characterizing viral diversity across isolates of the calcifying phytoplankton G. huxleyi

Harriet Alexander and James Wainaina  Read more

 

Interactive effects of multiple stressors on early life stages of vertebrates; Developmental neurotoxicity of environmental contaminants

Neel Aluru Read more

 

Harmful Algal Bloom Ecology

Mike Brosnahan  Read more

 

Marine Predators

Camrin Braun Read more

 

Environmental Toxicology

Jed Goldstone and John StegemanRead more

 

Chemical defense in diatoms/Mixotrophy in marine food webs

Matt Johnson Read more

 

Sensory biology and bioacoustics

Aran Mooney Read more

 

Diversity and Resilience of Seafloor Communities

Lauren Mullineaux Read more

 

Mathematical Ecology

Michael Neubert Read more

 

Population phenology in nearshore ecosystems

Jesús Pineda Read more

 

Biological-physical interactions at mid-trophic levels

Mei Sato Read more

 

Marine Mammal Behavior and Communication

Laela Sayigh Read more

 

 

Marine Mammal Physiology

Michelle Shero Read more

 

Phytoplankton Ecology

Heidi Sosik Read more

 

Marine Molecular Ecology

Carolyn Tepolt Read more

 

Isolation and Characterization of viruses associated with the cold-reef coral Astrangia poculata (Northern Star)

James Wainaina  Read more

 

 

Geology and Geophysics Dept.

Simulating Icebergs in the Laboratory

Alan Condron, Claudia Cenedese, Olivier Marchal and Jack Whitehead Read more

Much of the floor of the northern North Atlantic Ocean is covered by thick deposits of ice-rafted debris (IRD) that stretch all the way from Canada to the coast of Portugal, ~3,000 km to the east. These sediments were deposited throughout the last glacial period during Heinrich events, when icebergs were released from the major ice sheets fringing the North Atlantic Ocean. The alignment of these periods of ice-rafting with dramatic and large-scale changes in ocean and atmospheric circulation has often prompted the suggestion that the input of freshwater from melting icebergs played a critical role in altering glacial climate. Precisely how much ice and freshwater were involved in the formation of these ice-rafted sediment deposits is, however, largely unknown due to a very limited understanding of how much sediment is transported by icebergs. As such, the overall sensitivity of large-scale ocean circulation to freshwater forcing remains difficult to quantify. The goal of this exciting Summer Student Fellowship project is to simulate the transport of sediment by icebergs in the laboratory. The experiments will involve placing small ‘synthetic’ sediment-laden icebergs (made in a freezer) in a tank filled with saltwater to investigate how and where sediment ‘builds up’ on the tank floor. A creative set of experiments using icebergs with, for example, different sediment-loading patterns and drift speeds will be performed. The results from these experiments will then be used to improve simulations of Heinrich events made using the iceberg component of a numerical circulation model developed at MIT (MITberg). The ideal student should have some prior knowledge of fluid dynamics, physical oceanography, numerical modeling, and/or, paleoclimatology, although the most important quality is that the student is motivated! This exciting cross-departmental project will be co-supervised by WHOI scientists Alan Condron, Claudia Cenedese, Olivier Marchal, and Jack Whitehead. Alan Condron's profile Claudia Cenedese's profile Olivier Marchal's profile Jack Whitehead's profile

Geochemical Paleoceanography

Kassandra Costa Read more

Past changes in the ocean’s carbon cycle can provide data to check and improve models that help us predict future changes. These data can also help us ‘balance’ Earth’s carbon budget by showing where and how much carbon was stored in the ocean at times when the Earth has been much colder (glacial periods) or warmer (interglacial periods). In the Costa lab we study carbon storage in the deep ocean on long time scales (10,000s to 100,000s of years) to better understand the processes controlling atmospheric CO2 variability in the natural climate system. We primarily use the geochemical composition of marine sediment and microfossils in order to document changes in climatically relevant processes like dissolved carbon in seawater, burial of solid organic and inorganic carbon phases in sediment, and the effects oxygen concentrations in the deep ocean. We also study processes at the surface that pump carbon into the deep ocean, like biological productivity and deep water formation. The student will investigate the amount of carbon stored in the deep Pacific, its distribution in different water masses, and its impact on seafloor sediment chemistry on glacial-interglacial time periods. Potential SSF projects may include:

  1. Quantifying calcium carbonate burial in different sediment phases over time
  2. Reconstructing organic carbon production in the surface ocean and burial on the sea floor
  3. Investigating how carbon storage affects oxygen concentrations in the deep ocean
  4. Examining the foraminiferal assemblage response to changing climate conditions over glacial-interglacial cycles.

The SSF will join ongoing collaborations within our lab, and they will have the opportunity to learn multiple analytical techniques in geochemistry (230Th-normalization, major and trace elemental sediment geochemistry, metal to calcium ratios  in foraminifera (ICP-MS) and micropaleontology (foraminiferal assemblages, d18O, d13C). These projects are lab based, and so students should be prepared to leave their computers behind to work with mud, acids, microscopes, and more. All techniques are accessible to students without prior experience but with the motivation to learn. Kassandra Costa's website

The transition from fracture to flow in marble

Andrew Cross Read more

Advisors: Andrew Cross (WHOI), Matej Pec (MIT) In Earth’s shallow subsurface, rocks respond to stress by breaking and fracturing, producing devastating earthquakes. However, with increasing depth and temperature, rocks instead begin to flow over vast geologic timescales, rather than breaking. To understand the earthquake cycle, it is therefore imperative that we determine the processes that govern whether rocks will flow or fracture under stress. In pursuit of this goal, cylinders of Carrara marble have been compressed in the laboratory under various pressure, temperature, and strain-rate conditions spanning the so-called brittle-ductile transition. We now seek a student to characterize the microscopic structure of those samples using scanning electron microscope (SEM) data. Ultimately, we aim to determine the microphysical processes that accommodate deformation across the brittle-ductile transition. The student will have opportunities to engage in some (or all) of the following, depending on their interests:

  • training and using an unsupervised machine learning algorithm to identify and measure cracks in SEM images
  • using a Matlab program to measure crystallographic twins from electron backscatter diffraction (EBSD) maps
  • receive hands-on training in the acquisition of SEM images and EBSD data at WHOI/MBL
  • participate in virtual meetings with project collaborators at WHOI, MIT, and GFZ Potsdam
  • travel to MIT to meet with collaborators and participate in a deformation experiment on Carrara marble
  • interact with graduate students and postdoctoral investigators in WHOI’s Rock and Ice Deformation Laboratory

Interested students are encouraged to contact Dr. Andrew Cross (https://www.whoi.edu/profile/across/) to learn more about the project.

Projecting Coral and Reef Calcification in a Changing Ocean

Weifu Guo Read more

Coral reefs are among the most diverse ecosystems on Earth, with enormous cultural, ecological, and economic values. The calcium carbonate skeletons of stony corals are the main building blocks of the reef structure and provide food, shelter, and substrate for a myriad of other organisms. However, corals today face many global and local environmental stressors, such as warming, ocean acidification, sea level rise, and pollution, impeding their ability to calcify and maintain the reef structure. We are seeking to develop numerical methods (including machine learning techniques) to (a) assess the impact of past environmental changes (especially ocean acidification) on coral calcification and reef environment (e.g., reef water pH) and to (b) project the future coral and reef responses to 21st century climate change. The project(s) will involve (1) compilation and analysis of global coral growth and reef environment parameters, and/or (2) development of predictive statistical and mechanistic models of coral growth and reef environment. Interested students are strongly encouraged to contact Dr. Weifu Guo (https://www.whoi.edu/staff/wguo/) to discuss more details about the potential projects. Weifu Guo's profile

Distributed Acoustic Sensing (DAS), with a variety of seismic applications on the beach

Nicholas Harmon, Catherine Rychert, Wenbo Wu and Maddie Smith Read more

Example of surface deployed DAS recording of a seismic shot vs. a multichannel geophone recording (Harmon et al., 2022).

Distributed Acoustic Sensing (DAS) uses backscattered light from lasers transmitted through fiber optic cable to measure ground motions along the fiber, essentially turning the cable into hundreds to thousands of seismic sensors. This allows for the measurement of seismic and other environmental signals such as ocean waves and whale song at high spatial (cm-scale) and temporal scales (kHz). This technique is exploding because of its wide applications and versatility. Fiber optic cable is relatively inexpensive and easy to deploy in the field, opening up a wide range of environmental applications such as seismic and volcanic hazard monitoring to biological and oceanographic observation. In other words, surface deployed DAS is a new technique and there is an enormous opportunity to develop optimal field methods and advance or scientific understanding in a wide range of fields. The summer fellow will participate in a series of field deployments of DAS in field sites on Cape Cod including onshore offshore environments (beaches) to examine the feasibility of this type of surface deployment. The DAS will be deployed for passive and active seismic experiments to examine sensitivity of the DAS to a wide range of anthropogenic and environmental signals. The student will process the active seismic data and perform analysis on the continuous recordings to examine known signals such as ocean waves and nearby car and small boat noise. In addition, legacy datasets from land and submarine cables will be available for the student to explore, compare and interrogate. The ideal student will have a background in geophysics, geology, oceanography, physics, or mathematics. The student should have a basic knowledge of MATLAB or python and a willingness to deepen their skillset with computer programming. The student will develop skills in seismic network array processing and signal processing. The student will also develop skills in near surface geophysics survey design and execution, as well as oral and written presentation skills by presenting their work at group meetings. The student will work in a wider group at WHOI with Dr. Catherine Rychert, Dr. Madison Smith, Dr. Wenbo Wu, and PhD students and postdocs across the Geology and Geophysics and Applied Ocean Physics and Engineering departments. Nicholas Harmon Catherine Rychert Maddie Smith Wenbo Wu

Crustal structure beneath Puerto Rico from Marine Active Seismics

Nicholas Harmon, Pablo Canales, Catherine Rychert, Uri Ten Brink (USGS), et al. Read more

Shot gather of the vertical component with reduced time at station CELP from the Puerto Rican Seismic Network.

Puerto Rico is part of the relict Greater Antilles Arc that was constructed in the Cretaceous as the Caribbean Plate converged on the North and South American plates. The island has also been subjected to large tectonic motions, which has further shaped the region. Subduction is still occurring to the north of the island at the Puerto Rico trench at a very oblique angle, as well significant seismicity associated with the Muertos Trough to the south, making Puerto Rico a region of high seismic hazard. The crustal structure of Puerto Rico is important for our understanding of the evolution of the Greater Antilles Arc and the development of the Caribbean as well as understanding the seismic hazard of the region. In late fall 2023, the “Collaborative Research: Seismic Hazard, Lithosphere Hydration, and Double-Verging Structure of the Puerto Rico Subduction Zone: A Seismic Reflection and Refraction Perspective” project collected multichannel seismic and refraction data using airgun shots from the RV Marcus G Langseth to study the structure of the Puerto Rico Trench and Puerto Rico for a better understanding of hazard on the region. Several thousand shots were recorded on the permanent seismic network on land. The three component seismic data provides an opportunity to examine P-to-S wave conversions beneath the station generated at seismic velocity discontinuities below the station. The student will use the receiver function method to examine seismic velocity discontinuity structure beneath the seismic network and understand the construction the crust of Puerto Rico. The receiver function data will then be migrated to depth to construct a 2-D image of the structure beneath the station, which can be used to understand the layering with the crust and its construction. This is an amazing opportunity to provide tight constraints on Earth structure which are imperative to earthquake hazard mitigation in the region, with broader implications for our understanding of regional tectonics and the tectonic plate. The ideal student will have a background in geophysics, geology, oceanography, physics, or mathematics. The student should have a basic knowledge of MATLAB or python and a willingness to deepen their skillset with computer programming. The student will develop skills in seismic network array processing and signal processing. The student will also develop skills in active source seismics, as well as oral and written presentation skills by presenting their work at group meetings. The student will work in a wider group of scientists at WHOI and at the University of Puerto Rico, University of Texas and the US Geological Survey with Dr. Pablo Canales, Dr. Elizabeth Vanacore (UPR), Dr. Uri Ten Brink (USGS), Dr. ShuoShuo Han (UT), Dr. Catherine Rychert and PhD students and postdocs across the Geology and Geophysics Department at WHOI. Nicholas Harmon Pablo Canales Catherine Rychert Uri Ten Brink (USGS Woods Hole)

3D Seismic Modeling

Dan Lizzaralde Read more

Seismic wavefield modeling is fun, and you don’t necessarily have to understand the next sentence to do it.  I would like to test the idea that we can do 3D seismic imaging with 2D ‘feathered’, 2D pre-stack multi-channel seismic (MCS) data.  The ‘work’ involves generating a 3D seismic dataset by running a number of synthetic wavefield models, like the one shown below (for Line 5 of in the map below) for a couple of time steps.  Then, we take the synthetic wavefields recorded at the model’s surface and ‘migrate’ backwards to create an image of the subsurface.  We know this works for ‘perfect’ data, but we don’t know how sparse that data can be and still be able to create a reliable image. This project will help us understand new data that we have acquired with a 15-km-long seismic streamer across the Chain Transform fault in the equatorial Atlantic Ocean (Figure below), with the goal of understand transform-fault seismicity.  Normally we tow a single streamer behind a ship across a feature of interest, and the streamer follows the same path as the ship.  In the case of our new dataset, currents pushed the streamer laterally, so that it followed the ship at a ~20 degree angle to the track line (‘feathering’).  Consequently, standard 2D processing will not work.  We ought to be able to make a 3D image of the subsurface with this dataset using wavefield migration, but we need to test that this will work using a synthetic dataset. Interested students should have some level of competency with a programming language, some physics, and ideally some background in signal processing.  However, any student who finds the idea of this project cool and has a decent quantitative background will be able to do this and have fun in the process. Dan Lizzaralde profile

Entrainment of glacial meltwater by the North Atlantic Current: A numerical study

Olivier Marchal and Alan Condron Read more

High-resolution numerical simulation of the coastal current produced by the discharge of glacial meltwater from the Laurentian Channel during a glacial period of low sea level. Shown is the distribution of surface horizontal velocity after 150 days of sustained discharge. The maximum speed of the current is 1.3 m/s. The current has developed eddies all along the continental slope. This project will be concerned with the analysis of a similar simulation but for a larger domain including the oceanic region east of the Grand Banks of Newfoundland (GB) (O. Marchal and A. Condron, unpublished)

Paleoclimate records suggest that the last glacial period was punctuated by a series of rapid climatic changes. Although these changes were first documented in the circum North Atlantic, subsequent studies indicated that they may have been at least hemispheric in extent. The estimated magnitude of these changes is truly impressive. For example, ice core records from Central Greenland suggest that local air temperature increased repeatedly by 8-16oC in only about a century. With such a discovery, the once-traditional view that climatic changes are slow, with time scales far exceeding a human lifespan, has been overthrown, and understanding the processes leading to these changes has emerged as a most pressing question in climate research. A popular idea to explain rapid past climate changes involves the recurrent release of glacial melt water from the Laurentide Ice Sheet (LIS) – the ice cap that covered northern North America during the last glaciation. The introduction of glacial water into the ocean would have lowered the salinity of surface waters, particularly at high latitudes in the North Atlantic, thereby leading to enhanced vertical density stratification, reduced deep water formation, and ultimately, abated meridional overturning circulation and northward heat transport. The abated northward heat transport would have produced a rapid climate change, with cooling in parts of the northern hemisphere, such as in the northern North Atlantic. The goal of this project is to analyze detailed simulations of the transport of glacial meltwater in the North Atlantic which will be produced from a high-resolution numerical model of ocean circulation. In contrast to previous studies, our simulations will represent oceanic eddies with scales of 10-100 km, thereby allowing a detailed calculation of the pathway of the glacial water in the North Atlantic. Emphasis will be put on the entrainment of glacial water emanating from the LIS with the North Atlantic Current – the northeastern extension of the Gulf Stream east of the Grand Banks of Newfoundland – and on the transport of the glacial water to critical regions of deepwater formation. The student working on this project will be exposed to concepts emanating from various disciplines, including physical oceanography, the numerical modeling of ocean circulation, and paleoclimatology. Although prior exposure to branches such as physics and calculus would be desirable, the most important quality the student working on this project should have is motivation! This project will be co-supervised by WHOI scientists Olivier Marchal and Alan Condron. Olivier Marchal's profile Alan Condron's profile

The Nature of the Hawaiian Plume from Scattered Seismic Waves

Catherine Rychert and Nicholas Harmon Read more

Schematic of Hawaiian Plume Lithosphere interaction (Rychert et al., 2013).

Hawaii is the classic example of a mantle plume, where hot focused upwelling in the mantle leads to a volcanic island chain. Yet the origin and the processes that give rise to the Hawaiian volcanos are still the subject of vigorous debate. For example, where does the plume originate from, how wide is the plume is and how hot is it? One of the primary ways for investigating the nature of the Hawaiian plume come from seismic observations of the lithosphere-asthenosphere boundary (the boundary at base of the tectonic plate) and the mantle transition zone at 410 and 660 km depth. Interactions of the plume with the plate and also the mantle transition zone, the gate keeper of the mantle which plays a primary role in dictating mantle convection, are fundamental to our understanding of mantle dynamics and Earth’s evolution. Yet, the characteristics of the plume are debated, in part because most constraints come from a single methodology or dataset. Here we will develop an interdisciplinary and wholistic view of Hawaii and its plume. The student will use existing ocean bottom and land seismic data to examine the lithosphere-asthenosphere and mantle transition zone boundaries. The student will use existing SS wave precursor stacks, S-to-P and P-to-S receiver functions to develop a unified velocity discontinuity model for Hawaii. The student will use synthetic seismogram modelling to determine the optimal models and data combinations that produce a unified Earth structure. This will yield a high resolution image of the mantle structure beneath Hawaii and constrain the location, width, structure and temperature of the Hawaiian plume. The ideal student will have a background in geophysics, geology, oceanography, physics, or mathematics. The student should have a basic knowledge of MATLAB or python and a willingness to deepen their skillset with computer programming. The student will develop skills in seismic network array processing and signal processing. The student will also develop skills in passive source seismology specifically the receiver function method and SS precursor imaging, as well as oral and written presentation skills by presenting their work at group meetings. The student will work in a wider group of scientists at WHOI and Scripps Institution of Oceanography with Dr. Nicholas Harmon, Prof. Peter Shearer (SIO) and PhD students and postdocs across the Geology and Geophysics Department at WHOI. Nicholas Harmon Catherine Rychert

Marine ecosystems in deep time

Elizabeth Sibert Read more

Microfossil fish teeth and denticles, approximately 50 million years in age, from DSDP Site 596, a marine sediment core from the South Pacific ocean. The scale bar is 500 microns, and the fossils were imaged using a high resolution digital microscope.

Understanding how life has responded to past global change events is vital to predicting and mitigating anthropogenic impacts on the planet. The Paleo-Biological Oceanography lab explores how marine ecosystems have responded to environmental changes in earth’s history, going back hundreds of millions of years. This work lies at the intersection of biological oceanography, ichthyology, paleobiology, and paleoceanography, and is driven by big-picture questions, including: How have marine ecosystems evolved throughout Earth’s history? How did past climate and biotic events impact the structure, function, and evolution of marine ecosystems, and what can that tell us about potential impacts of future global change? How has the evolution of pelagic marine vertebrates, particularly fish and sharks, interacted with changes in the Earth system? To investigate these questions, we leverage an interdisciplinary toolkit that centers around microfossil fish teeth and shark scales (ichthyoliths) preserved in marine sediments in conjunction with fish biology, paleo-proxies, ecological models, and evolutionary tools, to study how fish, sharks, and marine ecosystems have evolved in concert with climatic and biotic changes throughout Earth’s history. Interested students are welcome to propose a particular time or event in Earth’s past to investigate, or can pick up a project that is currently ongoing. Ongoing projects include looking at fish and shark biodiversity and abundance across the Cretaceous-Paleogene Mass Extinction and to several major global warming and cooling events in earth’s past, developing a catalog of modern shark scale and fish tooth morphological diversity, machine learning applications to identifying and cataloging microfossils. No prior microscopy, fossil prep, sediment processing, or computer coding experience necessary, but a willingness to learn and develop these skills is essential. A student project would likely be primarily lab based with some computer programming and image processing, though the exact scope is determined by the student’s research interests. The work generally includes sediment processing (sieving and chemical separation), picking for fossils using a dissection microscope, high resolution digital imaging, dissection of collections-based fish and shark specimens, morphological characterization, and data analysis and interpretation using R. Students will work in a fully wheelchair-accessible laboratory space and collaborate with a multidisciplinary research team committed to high-quality research and effective mentoring in STEM.
Elizabeth Sibert profile Paleo-FISHES Lab

Groundwater fluxes using the "heat as a tracer" method

Robert Sohn Read more

National Park Service scientist Petra Zuniga deploys a temperature profiler at the Herring River restoration site in Wellfleet, MA.

Understanding the interaction between surface water and groundwater is a fundamental aspect of ecosystem and biogeochemical cycling studies in aquatic environments. Surface water penetrating into sediments (infiltration), groundwater discharging into the water column (discharge), and surface water that flows through shallow sediments before returning to the water column (hydrodynamic exchange), all play an important role in modulating solute and nutrient fluxes, but these fluxes are very difficult to measure, and they often exhibit considerable spatial and temporal variability. The simplest way to constrain fluxes is by measuring the sediment thermal gradient because fluid flux modulates both the steady state gradient and the downward diffusion of surface water temperature changes into the sediment. Heat is thus a tracer that can be used to constrain flux rates, and in contrast to other methods, temperature sensors are robust, inexpensive, and essentially maintenance-free. This project involves using newly developed, state-of-the-art, thermal instrumentation to measure groundwater fluxes in natural environments around Cape Cod, and to conduct controlled experiments in a newly built test tank in the AVAST facility. The ideal student will have a background in physics and some experience using Matlab software, though neither is strictly speaking necessary if there is a willingness to learn. Rob Sohn's profile

Marine Chemistry and Geochemistry Dept.

Understanding Marine Snow Particles

Ken Buesseler Read more

In Café Thorium’s lab we have been estimating carbon fluxes in the ocean since the late 80’s. Thorium is just one of many radioactive elements we measure. We analyze samples for both natural and manmade radionuclides. By knowing their source term, geochemistry, and radioactive decay properties, we use radionuclides as in situ tracers of a wide variety of chemical, biological and physical processes. Our techniques also include sediment traps, underwater cameras (UVP type), and particle incubations. Physical and biological processes occurring in the surface ocean generate a vast diversity of particles. These particles represent potential vehicles to export organic carbon to the deep ocean, where a small fraction can eventually be sequestered in the sediments. This process, known as the “biological pump”, influences the level of atmospheric carbon dioxide and thus the global climate system. Because of the complexity of this mechanism and its spatial and temporal variability, our predictions of the efficiency of the biological pump in varying conditions remain poorly constrained. A better understanding of particle properties is needed to reduce uncertainties. “Gel traps” allow for the collection of intact natural particles as they sink in the water column, and thus give a direct “picture” of the sinking flux at the depth of trap deployment. Image analysis of particles embedded in gels can provide particle statistics, and conversion from area to volume and from volume to carbon content, using empirical relationships, allows for estimation of the carbon flux and the relative importance of each category of particle. In this summer project a total of 15 gel samples from 2 different cruises in the North Atlantic will be visually examined by microscopy to quantify the flux and identity of individually sinking organisms. Cruises were carried out as part of WHOI's Ocean Twilight Zone (OTZ) project. Sinking particles and organisms that settle into the gel layer remained distinctly separated, preserving original characteristics of size and quantity and constituents. The images well serve us to 1) group marine snow in different visual categories, 2) estimate particle sinking fluxes in the ocean, 3) assess oceanic carbon export by particle type by using allometric relationships, 4) link particle visual properties to particle carbon content and particle sinking rates, and 5) compare images from gel samples with existing images from particle collected with Niskin bottles as a proof of concept. If you have basic knowledge of microscopy and marine taxonomy and an interest in learning about particle imaging techniques and their use to study the ocean, we encourage you to check out our group. You will be responsible of 1) taking images of gel sediment trap samples under the microscope for several magnifications, 2) running the existing python-based image processing scripts to analyze gel trap images by recognizing particles in an image, and then counting and measuring them, 3) estimating particle sinking fluxes from gel samples images, 4) comparing estimated fluxes to fluxes measurements available from other techniques used in the lab (e.g., sediment trap, Thorium-234 an, and UVP images), and 5) elaborating a synthesis report of activities carried out and main results. As a summer student in Café Thorium, you will learn about the many techniques we use to estimate carbon fluxes in the ocean and experience the dynamic environment that life at WHOI offers. Café Thorium website: https://cafethorium.whoi.edu/ OTZ projecthttps://twilightzone.whoi.edu/  Ken Buesseler profile

Manganese Redox Cycling within Stratified Waters

Colleen Hansel Read more

The Hansel lab studies the interactions between organisms and their surrounding geochemical environment. Manganese (Mn) is an important trace metal in the environment, where it controls the fate of pollutants, nutrients, and carbon. Within stratified waters, Mn cycles between dissolved and mineral forms in response to both biotic and abiotic reactions. This cycling is a dominant control on the productivity and biogeochemistry of various ecosystems. For the summer of 2025, the Hansel lab has a summer project available to study the speciation of Mn within both freshwater and marine ecosystems from archived and to-be-collected samples. The student will work side-by-side with an MIT-WHOI Joint Program student in the Hansel lab conducting both field and lab work to speciate Mn in solution and associated with particles (e.g., Mn oxide minerals). The student will gain experience conducting field sampling, wet chemistry analysis and kinetic assays, and mineral characterization (e.g., X-ray diffraction). For more information about our lab and research, see lab website below. Hansel Lab

Micronutrients and Marine Biogeochemistry in NIRVANA

Tristan Horner Read more

graphics-2016_SSFs-Ben_Geyman-Horner-_DSC3969_small_447773

Ben Geyman (2016 SSF), Tristan Horner, and Maureen Auro inspecting a trace-metal sample in the clean room. (Tom Kleindinst, WHOI)

Micronutrients are essential but scarce elements that play key roles in shaping oceanic processes. Elements like barium, cadmium, iodine, and iron influence marine life in two key ways: they participate in many biogeochemical reactions and serve as passive tracers for ocean circulation. Our research focuses on three central questions: What is the distribution of micronutrient elements in the marine environment? What sustains their distribution? How are marine sediments best used to trace these processes over time? Opportunities for Summer 2025 include: investigating the distribution of key micronutrient elements in the ocean using artificial intelligence; quantifying how fast micronutrients move and transform through marine systems using lab-based experiments; and, analyzing marine sediments to uncover past ocean conditions and their links to Earth’s climate. As a Summer Student Fellow in the NIRVANA Lab, you’ll gain hands-on experience processing samples for multi-element and isotope analysis in our state-of-the-art facilities. Alternatively, you’ll have the opportunity to explore advanced computational techniques, such as using machine learning to predict micronutrient distributions. We welcome curious, motivated students eager to learn about marine biogeochemistry and gain research experience. No prior lab or coding experience is required—you’ll receive personalized training from current lab members. Many past student fellows have developed their summer projects into senior theses or presented their findings at scientific conferences (e.g., Geyman et al., 2016; Tegler et al., 2018; Mete et al., 2022; Arif & Horner, 2024). Some projects have even resulted in peer-reviewed publications (e.g., Geyman et al., 2019; Dunlea, Tegler, et al., 2021; Mete et al., 2023). If you’re excited about studying ocean chemistry and advancing scientific knowledge about Earth’s evolution, I encourage you to apply for an SSF in the NIRVANA Lab in summer 2025! Tristan Horner's profile NIRVANA research group

Biogeochemical Modeling

Heather Kim Read more

The Kim Biogeochemical Modeling Laboratory at Woods Hole Oceanographic Institution is looking for summer student fellows interested in understanding how marine ecological and biogeochemical processes respond to and feedback on climate change. We specialize in data assimilative modeling of climatically sensitive regions, including polar regions (the West Antarctic Peninsula and Arctic Ocean) and the subtropical North Atlantic (the Bermuda Atlantic Time Series site). We combine mechanistic modeling and artificial intelligence and machine learning with rich observational datasets to investigate long-term trends and variability in marine biogeochemical processes, the biological carbon pump, and ocean carbon cycling. Summer student fellows will have the opportunity to work with our established data assimilative models and contribute to cutting-edge research in ocean biogeochemistry. Projects may include investigating the microbial control on the biological carbon pump, biogeochemical feedback on air-sea carbon dioxide fluxes, or biophysical interactions. Students with strong interests in developing programming skills for handling large datasets and gaining hands-on experience with modeling techniques are encouraged to apply. More information: https://kimlab.whoi.edu/

Marine Chemistry, Instrumentation and Engineering

Matthew Long Read more

Long_photo1_508575My research explores the ways that natural and anthropogenic processes influence the structure and function of marine ecosystems through unique engineering solutions, advanced instrumentation, and technology development. Studies of biogeochemical cycling, physical transport processes, and bio-physical interactions are principle components of my research into carbon and nutrient cycling in coastal environments. These topics are significant because the long-term effects of human activities, which are rapidly altering climatic conditions and nutrient cycling, are not well understood. Opportunities in my lab include the development of low-cost sensors through electro-mechanical engineering, development of advanced sensors and control systems, and field application and testing of sensing platforms. Advanced sensing systems collect high-frequency data (e.g. water chemistry, turbulence) which is Long_logo_508573used to calculate chemical fluxes through boundary layer exchange techniques allowing for opportunities for experience in time-series analysis, fluid mechanics, and biogeochemistry. Fellows with combined experience in engineering or biogeochemistry, and interests in electro-mechanical engineering, fluid mechanics, or ecosystem science will are encouraged to join the Machine Lab gain experience in interdisciplinary scientific research. Matthew Long's profile

Theoretical Chemistry and Isotope Biogeochemistry

Laura Motta Read more

The Motta Theoretical Chemistry and Isotope Biogeochemistry research group at Woods Hole Oceanographic Institution is looking for a summer fellow interested in implementing quantum-theoretical calculations of chemical reactions that would not occur without a magnetic interaction between the spins of the electrons and the spin of the nucleus of a heavy element in these molecules. This magnetic interaction is called hyperfine coupling (HFC). The resulting theoretical method developments will be used to investigate the magnetic isotope effect (MIE) in reactions of small molecules containing mercury. Phenomena such as the “magnetic compass” in migratory birds may also be facilitated by such processes, and therefore the research has the potential to solve long-standing scientific mysteries. A greater understanding of spin-forbidden reactions and whether they can be facilitated by HFC will have broad-ranging impacts across various scientific disciplines, from chemistry to environmental sciences. The summer student fellows will have the opportunity to work with our established relativistic quantum chemistry methods for calculating HFC. They will contribute to cutting-edge research in theoretical chemistry, focusing on applications to environmentally relevant reactions and enhancing the interpretation of mass-independent stable isotope signals. The ideal candidate should have completed an undergraduate course in quantum chemistry. More information: Motta Lab

Ocean Observing and Modeling to Understand Biogeochemical Cycles and Carbon Fluxes

David (Roo) Nicholson Read more

In the Nicholson biogeochemical ocean observing and modeling lab (BOOMLAB) we use biogeochemical sensor observations on platforms such as floats, gliders and autonomous surface vehicles to better understand ocean carbon uptake, oxygen cycling and primary productivity. BOOMLAB is helping to build a new sensor network for the global ocean called the Global Ocean Biogeochemical Array (or GO-BGC) and will deploy biogeochemical Argo floats to provide the observations needed to answer questions such as (1) Will the ocean continue to take up ~25% of carbon emitted by human activity? (2) How will future warming impact the productivity and rates of photosynthesis in the ocean? and (3) What are the patterns and trends in the size of oxygen deficient zones and ocean acidification? SSF projects could involve analysis of chemical and optical sensor data from these systems to better understand ocean productivity and carbon fluxes. Another project we are involved in is EXport Processes in the Ocean RemoTe Sensing (EXPORTS). EXPORTS is a large-scale NASA-led field campaign that will provide critical information for quantifying the export and fate of upper ocean net primary production (NPP) using satellite observations and state of the art ocean technologies. For EXPORTS, BOOMLAB members are comparing sensor-based observations from gliders and floats to ship and satellite measurements to develop improved algorithms for estimating carbon fluxes in the ocean. If you have a strong quantitative background and an interest in ocean technology and computational approaches to studying biogeochemistry we encourage you to check out our group. As a summer student in the BOOMLAB you will learn about large scale biogeochemical cycles, ocean sensors, and build programming skills to interpret in situ, model and remotely sensed datasets. BOOMLAB website Global Ocean Biogeochemistry Array EXPORTS Project

CO2 Chemistry, Ocean Acidification and Sensor Development

Zhaohui Aleck Wang Read more

In Wang’s CO2 chemistry lab, we study seawater carbonate chemistry, coastal carbon cycle, ocean acidification (OA), and the blue carbon systems (e.g., salt marshes). We are also specialized to develop in situ sensors to measure seawater CO2 parameters and other chemical species. Summer projects include: (1) Climate solution: Marine CO2 Removal (mCDR). The consensus of the climate science community is that reduction of carbon emissions alone is not enough to curb the global mean temperature increase below 2°C at the end of this century, the threshold that catastrophic consequences of global warming may occur. Global society needs to take action to remove CO2 from the atmosphere to subsidize the effort of carbon emission reduction to achieve the goal of <2°C warming. We have started a few projects to study marine CO2 removal methods and their potential environmental impacts. Naturally, tidal wetlands, such as salt marshes and mangroves, remove large amounts of CO2 from the atmosphere. We leverage these ‘blue carbon’ ecosystems to develop a novel, advantageous approach to coastal mCDR, which couple CO2 capture by coastal wetlands with enhanced coastal Ocean Alkalinity Enhancement (OAE) and local-scale Ocean Acidification mitigation. In OAE, basic minerals or solutions are added to seawater to increase its alkalinity and thus the capacity of CO2 uptake. The student will have the opportunity to participate in the multi-institution project to conduct lab and field experiments to test the new method and assess its benefits and impacts, particularly related to carbonate chemistry and CO2 fluxes. (Photo 1. Sampling porewater chemistry in mCDR treated marsh sediments.)   (2) New-generation in situ carbon and pH sensors. The goal of this work is to develop low-cost in situ sensor system for high-frequency measurements of seawater CO2 parameters, i.e., pH, pCO2, dissolved inorganic carbon (DIC), and alkalinity (Alk). We will leverage this development and our on-going collaborations with the fishing community, NOAA fishery, and citizen scientists for large-scale deployments of these sensors to establish a cost-effective, wireless connected, openly accessible coastal carbon observing network. The student can join the sensor development team to learn engineering skills (electronics, optics, mechanics, and software) as well as seawater carbonate chemistry to develop various in situ sensors to seawater CO2 parameters. (Photo 2. Deployment of a Channelized Optical System (CHANOS) II DIC sensor on ROV Global Explorer) Zhaohui 'Aleck' Wang's profile

 

Marine Policy Center

Humans and Oceans in a Changing Climate

Yaqin Liu Read more

The MarineEcon Lab led by Dr. Marine (Yaqin) Liu focus on the impact of climate change on human activities in the oceans and ways to improve resilience. We have the following three projects for prospect 2025 summer student fellows to choose from: (1) projecting fishing grounds of longliners in the Indian Ocean, (2) analyzing the impact of offshore wind farms on fishing activities, and (3) understanding energy poverty.

Project (1) utilizes AIS-based fishing observations data and physical oceanographic data to feed a machine learning model. Coding in R/Python and intensive data analysis involved. Intermediate coding skills are required. Students will learn processing spatial-temporal data, machine learning models, and coding.

Project (2) utilizes AIS-based fishing observation data and ocean infrastructure data for an impact assessment analysis. Coding in R/Python and intensive data analysis involved. Excellent coding skills are expected. Students will learn processing large-scale spatial-temporal data, economic models, and impact analysis.

Project (3) aims at a review paper, we compile, sort, extract key information from existing literature on energy poverty and energy justice, leveraging AI to analyze literature information, summarizes current findings, identify research gaps and key areas for future research. Excellent reading, writing and critical thinking skills are expected. Students will learn the field of energy poverty, practice using AI to process information, and write for academic journals.

Further information about Dr. Marine Liu and the lab available at
Website: MarineEcon Lab 
Profile: https://www.whoi.edu/profile/yaqliu/
Feel free to reach out for any questions/interests/inquiries!

Sea-level Rise and Flood Insurance

Michael Weir Read more

Sea level rise combined with more intense hurricanes and winter storms present a serious threat to coastal residents in Massachusetts. Despite the projected rise in sea level and coastal hazards, the purchase of flood insurance in coastal communities is experiencing a downward trend on Cape Cod. Why are coastal homeowners not insuring and how might we encourage them to consider protecting their properties?

To answer these questions, students will combine Cape Cod housing data with economic survey data to investigate the types of households most likely to purchase flood insurance and estimate how much they are willing to pay to protect themselves and their properties from flood risk. Students will learn about the methods economists use to evaluate policy impacts, data organization and statistical analysis using R, introductory GIS skills, and how to communicate research findings to a broad audience. Learn more about my other projects here!

Physical Oceanography Dept.

Simulating Icebergs in the Laboratory

Alan Condron, Claudia Cenedese, Olivier Marchal and Jack Whitehead Read more

Much of the floor of the northern North Atlantic Ocean is covered by thick deposits of ice-rafted debris (IRD) that stretch all the way from Canada to the coast of Portugal, ~3,000 km to the east. These sediments were deposited throughout the last glacial period during Heinrich events, when icebergs were released from the major ice sheets fringing the North Atlantic Ocean. The alignment of these periods of ice-rafting with dramatic and large-scale changes in ocean and atmospheric circulation has often prompted the suggestion that the input of freshwater from melting icebergs played a critical role in altering glacial climate. Precisely how much ice and freshwater were involved in the formation of these ice-rafted sediment deposits is, however, largely unknown due to a very limited understanding of how much sediment is transported by icebergs. As such, the overall sensitivity of large-scale ocean circulation to freshwater forcing remains difficult to quantify. The goal of this exciting Summer Student Fellowship project is to simulate the transport of sediment by icebergs in the laboratory. The experiments will involve placing small ‘synthetic’ sediment-laden icebergs (made in a freezer) in a tank filled with saltwater to investigate how and where sediment ‘builds up’ on the tank floor. A creative set of experiments using icebergs with, for example, different sediment-loading patterns and drift speeds will be performed. The results from these experiments will then be used to improve simulations of Heinrich events made using the iceberg component of a numerical circulation model developed at MIT (MITberg). The ideal student should have some prior knowledge of fluid dynamics, physical oceanography, numerical modeling, and/or, paleoclimatology, although the most important quality is that the student is motivated! This exciting cross-departmental project will be co-supervised by WHOI scientists Alan Condron, Claudia Cenedese, Olivier Marchal, and Jack Whitehead.

Alan Condron's profile
Claudia Cenedese's profile
Olivier Marchal's profile

Jack Whitehead's profile

Along-Shelf Currents at the OOI Pioneer-New England Shelf Array from Glider DVL Observations

Al Plueddemann and Andrew Reed Read more

The Ocean Observatories Initiative (OOI) is a NSF-funded project for long-term infrastructure for ocean observations. The Coastal & Global Scale (CGSN) nodes group based at WHOI builds, deploys, and maintains moored and mobile autonomous platforms equipped with sensors that measure physical, meteorological, biogeochemical, and biological properties. CGSN is also responsible for quality controlling the data via the use of automated algorithms, validation against discrete ship-based samples, and cross-comparison between co-located instruments.

This project will use autonomous glider DVL (doppler velocity log) water velocity data from the OOI Pioneer-New England Shelf array. The DVL data will be used to derive estimates of the along-shelf currents for comparison with geostrophic calculations. The first part of the project will involve quality-controlling the DVL data using vendor supplied algorithms as well as developing their own methods. The quality-controlled DVL data will then be validated against moored velocity data when the gliders are near the moorings. This validated dataset will then be ready to construct cross-shelf transects of water velocities and compare against calculated geostrophic velocities.

Interest and Skills: Interested students should have a physics or related (e.g. oceanography/marine science, engineering, atmospheric science) background, an interest in observational oceanography and instrumentation, and have had exposure to data analysis and coding. They will be working extensively with the CGSN Data Team and Data Science working group, which primarily codes in python, and makes use of GitHub for version control and collaboration. The SSF can expect to gain significant experience in data analysis, visualization, code-sharing and collaboration, observational oceanography, data science, and instrumentation. They can also expect to be exposed to the mechanical and electrical engineering, as well as the cyber infrastructure, that goes into running, maintaining, and delivering data from moored and autonomous systems deployed long-term in the ocean.

Climate Science

Caroline Ummenhofer Read more

Understanding the impact of climate variability and extreme events on human and natural systems

Schematic depicting connections between the Azores subtropical high pressure system and regional climate impacts. Red (blue) shading over the ocean indicates sea level pressure increase (decrease) during recent decades compared with the 20th century long-term mean (white contours). Green (brown) shading over land indicates increase (decrease) in precipitation, and arrows indicate changes in surface winds. All analyses focused on the wintertime (December–March) climatic conditions during the period 1981-2013, relative to the long-term mean wintertime climate for the 20th century (i.e. 1901-1980). From Thatcher et al. (2020).

Ummenhofer’s group focuses on ocean-atmosphere interactions, variability and change across different components of the climate system, and the resulting regional impacts. We aim to develop an understanding of the underlying mechanisms of the ocean’s role in regional climate and how that information could be useful for tackling problems of societal relevance. We address rainfall variability and extreme events, such as droughts and floods, across a range of scales: from individual synoptic events to interannual, decadal variability and beyond. Research involves both present-day climate conditions, variability over past centuries, as well as future changes in a warming world.

Potential projects could address variability and change in various climate modes; use information of environmental conditions from natural and historical archives, such as tree rings or ship logbooks, to track changes in climate patterns around the world; or investigate ecological impacts to extreme climate and weather events. Data analysis for the projects will be based on python, with training and peer-support for developing analysis skills available. Projects will help the student gain hands-on experience in applying diverse environmental datasets in an interdisciplinary context, obtain skills in scientific data analysis and visualization of large multi-dimensional datasets, as well as learn about a broad range of ocean/atmosphere/climate science topics.

Caroline Ummenhofer's lab

 

US Geological Survey - Woods Hole Coastal and Marine Science Center

Sedimentology and Sediment Geochemistry

Steve Phillips Read more

Lab research theme: Gas hydrates are ice-like solids composed of water and gas, most commonly methane, that are found within sediments in the cold temperatures and high pressures of deep marine and permafrost environments. Gas hydrates are of great interest as a major component of the global carbon cycle, a potential energy source, and a potential seafloor slope stability hazard. The USGS Gas Hydrates Project aims to advance the understanding of gas hydrates on continental margin and permafrost settings through US and international field expeditions, laboratory experiments, and numerical modeling. We often carry out this research as part of larger collaborations with other federal agencies and academic institutions. Our laboratory facilities in Woods Hole have capabilities to characterize various sediment properties and perform biogeochemical measurements.

Project details: The summer project will focus on better understanding the early diagenetic (post-depositional) iron sulfide formation in gas hydrate-bearing sediments collected from the offshore Cascadia Margin. This work will help us understand how the formation of pyrite and other iron sulfide minerals tracks past methane fluxes in this dynamic environment.

Interest/skill sets: We seek a summer student who is fascinated by sediments and sedimentary rocks and the geological history they reveal. A basic knowledge of mineralogy, petrology, and sedimentology would be beneficial.

New skills/training: The summer student fellow will learn to make magnetic susceptibility and other rock magnetic measurements on sediment samples from the offshore Cascadia margin. The student fellow will also measure quantitative elemental abundances using X-ray fluorescence (XRF) and carbon-nitrogen-sulfur elemental analysis. The summer student will have the opportunity to integrate rock magnetic and solid-phase geochemical records to unravel this diagenetic history.

USGS Gas Hydrates Project

Gas Hydrates Project Physical Properties Lab

Steve Phillips profile

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