Making Organic Molecules in Hydrothermal Vents in the Absence of Life


In 2009, scientists from Woods Hole Oceanographic Institution embarked on a NASA-funded mission to the Mid-Cayman Rise in the Caribbean, in search of a type of deep-sea hot-spring or hydrothermal vent that they believed held clues to the search for life on other planets. They were looking for a site with a venting process that produces a lot of hydrogen because of the potential it holds for the chemical, or abiotic, creation of organic molecules like methane – possible precursors to the prebiotic compounds from which life on Earth emerged.   

For more than a decade, the scientific community has postulated that in such an environment, methane and other organic compounds could be spontaneously produced by chemical reactions between hydrogen from the vent fluid and carbon dioxide (CO2).  The theory made perfect sense, but showing that it happened in nature was challenging.

Now we know why:  an analysis of the vent fluid chemistry proves that for some organic compounds, it doesn’t happen that way.

New research by geochemists at Woods Hole Oceanographic Institution, published June 8 in the Proceedings of the National Academy of Sciences, is the first to show that methane formation does not occur during the relatively quick fluid circulation process, despite extraordinarily high hydrogen contents in the waters.  While the methane in the Von Damm vent system they studied was produced through chemical reactions (abiotically), it was produced on geologic time scales deep beneath the seafloor and independent of the venting process. Their research further reveals that another organic abiotic compound is formed during the vent circulation process at adjacent lower temperature, higher pH vents, but reaction rates are too slow to completely reduce the carbon all the way to methane. 

“We’ve really improved our understanding of the origin of abiotic hydrocarbons in all ridge-crest hydrothermal systems by identifying specifically where carbon is being transformed within the vent fluid circulation pathway,” said Jill McDermott, lead author of the study and a recent graduate of the MIT/WHOI Joint Program in Oceanography. “We also have a much better sense of how quickly these reactions are occurring in natural systems – some take thousands of years, while others only take hours to days.”

Methane and other organic compounds in natural waters can originate from three types of sources: living organisms, decomposition of living or dead biomass, and ‘abiotic’ formation via purely chemical processes with no participation from living organisms.

Finding out how methane and other organic species are formed in deep-sea hydrothermal systems is compelling because these compounds support modern day life, providing energy for microbial communities in the deep biosphere, and because of the potential role of abiotically-formed organic compounds in the origin of life.

The study, whose authors also include WHOI geochemists Jeffrey Seewald, Christopher German, and Sean Sylva, indicates that methane at the Von Damm vent field was created by a reaction between CO2 and water trapped for thousands of years within cooling volcanic rocks deep within Earth’s crust.  Many vent sites are tectonically active, and when tectonic shifts occur, the rocks beneath the sea floor can crack, allowing seawater to penetrate and leach methane from within the rocks. Eventually that methane is carried up to the seafloor by the circulating vent water. While this concept had previously been theorized, this paper is the first to demonstrate its importance in nature. 

How the researchers determined this was a neat trick, involving balancing the vent site’s CO2 budget by measuring the amount of CO2 in seawater in the vent fluid; analyzing the isotopic makeup of the CO2; and radiocarbon dating the CO2. The results of the analysis showed there has been no CO2 added, and no CO2 removed, and therefore it could not have been used to form methane.

An examination of the methane showed it was “radiocarbon dead.” That meant it was older than 50,000 years and carried no modern signature, indicating the methane came from ancient geologic sources.

 “We were able to use enough different but complementary lines of evidence to show that the methane formation here is a purely chemical process, and that it happens in the absence of life,” said McDermott.

But why wasn’t the CO2 at this site reacting with the hydrogen to create methane? That question led to an equally fascinating discovery: a reaction between CO2 and hydrogen was occurring, but it wasn’t proceeding fast enough or progressing far enough to create methane.

Instead CO2 and hydrogen combined to create an “intermediate” compound called formate – an important “pre-biotic” organic compound. 

The team discovered the formate when analyzing the vent fluids at cooler off-shoot vent sites at the Von Damm site and found it had less CO2 than it should have. That meant the CO2 must have been reacting to form something else. They determined the formate concentration in those fluids, and, said McDermott, “it turns out the amount of formate species that was formed in each one of these fluids, perfectly matches the amount of CO2 that was lost. It's so rare that you can actually close the budget, and figure out where all the carbon has gone.”  The amount of formate present also matched the amount predicted by thermodynamic models.

“This is an excellent example where hypotheses developed over the years from laboratory experiments and theoretical models could be tested and verified in nature,” said co-author Seewald.

Intermediate species like formate have a lot of energy available. They're also a good energy source for microbes.

In fact, formate may be used by modern day microbes to generate methane in the subsurface biosphere. Formate may also have served as the first step toward forming reduced carbon compounds that were central to primitive biochemical pathways on early Earth.

“A particularly exciting aspect of this study is that our newest discoveries here on Earth provide a compelling ‘real-world’ example of just how pre-biotic chemistry could also arise elsewhere,” said co-author German.

This research was supported by grants from NASA and the National Science Foundation.  Additional funds were provided by the the NOAA Office of Ocean Exploration and Research and the Woods Hole Oceanographic Institution Ocean Ridge Initiative.

The Woods Hole Oceanographic Institution is a private, non-profit organization on Cape Cod, Mass., dedicated to marine research, engineering, and higher education. Established in 1930 on a recommendation from the National Academy of Sciences, its primary mission is to understand the ocean and its interaction with the Earth as a whole, and to communicate a basic understanding of the ocean's role in the changing global environment. For more information, please visit


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ROV Little Hercules exploring the spire at the Von Damm vent field.  Located at 2350 meters' depth on the Mid-Cayman Rise, hydrothermal fluids emanate from the Von Damm vent field at temperatures as high as 226°C (439°F). The new study determined that the methane contained in the fluid leached from sub-seafloor rocks, and was not formed through hydrothermal vent circulation, as had been previously thought. (Photo by NOAA Ocean Exploration Program / Okeanos Explorer)

Heated vent fluid shimmers in surrounding seawater at an off-shoot vent at the Von Damm site. While still very hot, the vent fluid at adjacent vents is cooler that at the main spire, and, the team found, contained less CO2 than it should have. The researchers determined a reaction between CO2 and hydrogen was occurring at the cooler vents, but it wasn’t proceeding fast enough or progressing far enough to create methane. Instead CO2 and hydrogen combined to create an “intermediate” compound called formate – an important “pre-biotic” organic compound. (Photo by NOAA Ocean Exploration Program / Okeanos Explorer)

Vent fluid samples were collected using titanium isobaric gas-tight (IGT) samplers deployed by the remotely operated vehicle Jason aboard the R/V Atlantis in January 2012. The IGTs, unique instruments developed by Jeff Seewald and a team of WHOI engineers, are designed to maintain the sample fluid at the high pressure at which it was drawn. (Photo by Chris German, WHOI/NASA, NSF/ROV Jason/Woods Hole Oceanographic Institution)

The study's lead author Jill McDermott titrating fluid samples aboard the R/V Atlantis in January 2012. (Photo by Frieder Klein, Woods Hole Oceanographic Institution)

See Also

Pathways for abiotic organic synthesis at submarine hydrothermal fields

Article in Proceedings of the National Academy of Sciences

Oases of Life blog

From 2009 expedition to the Mid-Cayman Rise