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Peacock, E. E., R. J. Olson, and H. M. Sosik. 2014. Parasitic infection of the diatom Guinardia delicatula, a recurrent and ecologically important phenomenon on the New England Shelf. Marine Ecology Progress Series. 503: 1-10. (Feature Article)

Fischer, A. D., E. A. Moberg, H. Alexander, E. F. Brownlee, K. R. Hunter-Cevera, K. J. Pitz, S. Z. Rosengard, and H. M. Sosik. 2014. Sixty years of Sverdrup: A retrospective of progress in the study of phytoplankton blooms. Oceanography. 27: 222-235. Supplement Bibliography.

Brosnahan, M. L., S. Farzon, B. A. Keafer, H. M. Sosik, R. J. Olson, and D. M. Anderson. Complexities of bloom dynamics in the toxic dinoflagellate Alexandrium fundyense revealed through DNA measurements by imaging flow cytometry coupled with species-specific rRNA probes. Deep Sea Research Part II.

Duffy, J.E., L.A. Amaral-Zettler, D.G. Fautin, G. Paulay, T. A. Rynearson, H.M. Sosik, and J.J. Stachowizcz. 2013. Envisioning a national marine biodiversity observation network. BioScience. 63: 350-361.

Pearl, M.R., J.A. Swanstrom, L.S. Bruckman, T.L. Richardson, T.J. Shaw, H.M. Sosik, and M.L. Myrick. 2013. Taxonomic classification of phytoplankton with multivariate optical computing, Part III: Demonstration. Applied Spectroscopy. 67: 640-647.

Campbell, L. D.W. Henrichs, R.J. Olson and H.M. Sosik. 2013. Continuous automated imaging-in-flow cytometry for detection and early warning of Karenia brevis blooms in the Gulf of Mexico. Environmental Science and Pollution Research. 10.1007/s11356-012-1437-4

Fishman, J, L. T. Iraci , J. Al-Saadi, K. Chance, F. Chavez, M. Chin, P. Coble, C. Davis, P. M. DiGiacomo, D. Edwards, A.Eldering, J. Goes, J. Herman, C. Hu, D.J. Jacob, C. Jordan, S. R. Kawa; R. Key, X. Liu, S. Lohrenz; A. Mannino; V. Natraj, D. Neil, J. Neu, M. Newchurch, K. Pickering, J. Salisbury, H. Sosik, A. Subramaniam, M, Tzortziou, J. Wang, and M. Wang. 2012. Progress report on NASA's GEO-CAPE mission: Fulfilling the mandate and meeting the challenges of the nation's next generation of atmospheric composition and coastal ecosystem measurements. Bulletin of the American Meteorological Society.10.1175/BAMS-D-11-00201.1

Laney, S.R., R.J. Olson, and H.M. Sosik. 2012. Diatoms favor their younger daughters. Limnology and Oceanography. 57: 1572-1578.

Arrigo, K.R., D.K. Perovich, R.S. Pickart, Z.W. Brown, G.L. van Dijken, K.E. Lowry, M.M. Mills, M.A. Palmer, W.M. Balch, F. Bahr, N.R. Bates, C. Benitze-Nelson, B. Bowler, E. Brownlee, J.K. Ehn, K.E. Frey, R. Garley, S.R. Laney, L. Lubelczyk, J. Mathis, A. Matsuoka, B.G. Mitchell, G.W.K. Moore, E. Ortega-Retuerta, S. Pal, C.M. Paloshenski, R.A. Reynolds, B. Schieber, H.M. Sosik, M. Stephens, and J.H. Swift. 2012. Massive phytoplankton blooms under Arctic sea ice. Science. 336: 1408. Supplementory materials.

Moberg, E.A. and H.M. Sosik. Distance maps to estimate cell volume from two-dimensional plankton images. Limnology and Oceanography: Methods. 10: 278-288.

Hendrichs, D., H.M. Sosik, R.J. Olson, and L. Campbell. 2011. Phylogenetic analysis of Brachidinium capitatum (Dinophyceae) from the Gulf of Mexico indications membership in the Kareniaceae. J. Phycol. 47: 366–374.

Amaral-Zettler, L., J. E. Duffy, D. Fautin, G. Paulay, T. Rynearson, H. Sosik, and J. Stachowicz. 2011. Attaining Operational Marine Biodiversity Observation Network (BON): Synthesis Report.

Sieracki, M.E. Benfield, M., Hanson, A., Davis, C., Pilskaln, C.H., Checkley, D., Sosik, H.M., Ashjian, C., Culverhouse, P., Cowen, R., Lopes, R., Balch, W., Irigoien, X. 2009. Optical plankton imaging and analysis systems for ocean observation. OceanObs’09, 11 p. (peer-reviewed)

Campbell, L., Olson, R.J., Sosik, H.M., Abraham, A., Henrichs, D.W., Hyatt, C.J. Buskey, E.J. 2010. First harmful Dinophysis (DINOPHYCEAE, DINOPHYSIALES) bloom in the US is revealed by automated imaging flow cytometry. Journal of Phycology. 46: 66–75.

Hlista, B. L., H. M. Sosik, L. V. Martin Traykovski, R. D. Kenney, and M. J. Moore. 2009. Seasonal and inter-annual correlations between Right Whale distribution and fecundity and chlorophyll concentration in the Gulf of Maine, USA. Marine Ecology Progress Series. 394: 289-302.

Moore, C., A. Barnard, P. Fietzek, M. R. Lewis, H. M. Sosik, S. White, and O. Zielinski. 2009. Optical tools for ocean monitoring and research.  Ocean Science. 5, 661–684.

Sosik, H. M. 2008. Characterizing seawater constituents from optical properties. In M. Babin, C. S. Roesler and J. J. Cullen [eds.], Real-time coastal observing systems for ecosystem dynamics and harmful algal blooms. UNESCO, in press. (peer reviewed)

Olson, R.J. and H.M. Sosik.  2007.  A submersible imaging-in-flow instrument to analyze nano- and microplankton:  Imaging FlowCytobot.  Limnology and Oceanography: Methods.  5: 195-203.

Sosik, H.M. and R.J. Olson.  2007.  Automated taxonomic classification of phytoplankton sampled with imaging-in-flow cytometry.  Limnology and Oceanography: Methods.  5: 204-216.

Babin, M., J. J. Cullen, C. S. Roesler, P. L. Donaghay, G. J., Doucette, M. Kahru, M. R. Lewis, C. A. Scholin, M. E. Sieracki, and H.M. Sosik.  2005.  New approaches and technologies for observing harmful algal blooms.  Oceanography.  18: 210-227.

Green, R. E. and H. M. Sosik.  2004.  Analysis of apparent optical properties and ocean color algorithms using measurements of seawater constituents in continental shelf surface waters.  Journal of Geophysical Research.  109, C03026, doi:10.1029/2003JC001977.

Green, R.E., H.M. Sosik, and R.J. Olson.  2003.  Contributions of phytoplankton and other particles to inherent optical properties in continental shelf waters.  Limnology and Oceanography.  48: 2377-2391.

Green, R.E., H. M. Sosik, R. J. Olson, and M. D. DuRand.  2003.  Flow cytometric determination of size and complex refractive index for marine particles: comparison with bulk estimates.  Applied Optics.  42: 526-541. 

Hiscock, M.R., Marra, J., Smith, W.O., Jr., Goericke, R., Measures, C.I., Vink, S., Olson, R.J., Sosik, H.M., Barber, R.T.  2003.  Primary productivity and its regulation in the Pacific Sector of the Southern Ocean.  Deep-Sea Research II.  50: 533-558. 

Johnsen, S. and H. M. Sosik.  2003.  Cryptic coloration as a camouflage strategy in coastal waters.  Limnology and Oceanography.  48: 1277-1288.

Martin Traykovski, L.V. and H. M. Sosik.  2003.  Feature-based classification of optical water types in the northwest Atlantic based on satellite ocean color data.  Journal of Geophysical Research.  108: 3150-

Olson, R. J., A. Shalapyonok, and H. M. Sosik.  2003.  An automated submersible flow cytometer for analyzing pico- and nanophytoplankton: FlowCytobot.  Deep-Sea Research I.  50: 301-315. 

Sosik, H.M, R.J. Olson, M.G. Neubert, and A.R. Solow.  2003.  Growth rates of coastal phytoplankton from time-series measurements with a submersible flow cytometer.  Limnology and Oceanography.  48: 1756-1765. 

DuRand, M. D., R. E. Green, H. M. Sosik, and R. J. Olson.  2002.  Diel variations in optical properties of Micromonas pusilla (Prasinophyceae).  Journal of  Phycology.  38: 1132-1142.  

Finenko, Z. Z., T. Ya. Churilova, H. M. Sosik, and O. Basturk.  2002.  Variability of photosynthetic parameters of the surface phytoplankton in the Black Sea.  Oceanology.  40: 53-67.  (translated from Russian) 

Sosik, H. M. and R. J. Olson.  2002.  Phytoplankton and iron limitation of photosynthetic efficiency in the Southern Ocean during late summer.  Deep-Sea Research I.  49: 1195-1216.

Wiebe, P. H., T. K. Stanton, C. H. Greene, M. C. Benfield, H. M. Sosik, T. Austin, J. D. Warren, and T. Hammar.  2002.  BIOMAPER II: an integrated instrument platform for coupled biological and physical measurements in coastal and oceanic regimes.  IEEE Journal of Oceanic Engineering.  27: 700-716.

Gardner, W. D., J. C. Blakey, I. D. Walsh, M. J. Richardson, S. Pegau, J. R. V. Zaneveld, C. Roesler, M. Gregg, J. MacKinnon, H. M. Sosik, and A. J. Williams, III.  2001.  Optics, particles, stratification and storms on the New England continental shelf.  Journal of Geophysical Research.  106: 9473-9497. 

Sosik, H. M., R. E. Green, W. S. Pegau and C. S. Roesler.  2001.  Temporal and vertical variability in optical properties of New England shelf waters during late summer and spring.  Journal of Geophysical Research.  106: 9455-9472. 

Olson, R. J., H. M. Sosik, and A. Shalapyonok.  2000.  Effects of iron enrichment on phytoplankton in the Southern Ocean during late summer: Active fluorescence and flow cytometric analyses.  Deep-Sea Research II.  47: 3181-3200.   

Olson, R. J., H. M. Sosik, and A. M. Chekalyuk.  1999.  Photosynthetic characteristics of marine phytoplankton from pump-during-probe fluorometry of individual cells at sea.  Cytometry.  37: 1-13.

Sosik, H. M.  1999.  Storage of marine particulate samples for light absorption measurements.  Limnology and Oceanography.  44: 1139-1141. 

Olson, R. J., A. M. Chekalyuk and H. M. Sosik.  1996.  Phytoplankton photosynthetic characteristics from fluorescence induction assays of individual cells.  Limnology and Oceanography.  41: 1253-1263.

Sosik, H. M.  1996.  Bio-optical modeling of primary production: Consequences of variability in quantum yield and specific absorption.  Marine Ecological Progress Series.  143: 225-238.

Sosik, H. M. and B. G. Mitchell.  1995.  Light absorption by phytoplankton, photosynthetic pigments and detritus in the California Current System.  Deep-Sea Research I.  42: 1717-1748.

Sosik, H. M. and B. G. Mitchell.  1994.  Effects of temperature on growth and light absorption in Dunaliella tertiolecta.  Journal of Phycology.  30: 833-840.

Sosik, H. M., M. Vernet and B. G. Mitchell.  1992.  A comparison of particulate absorption properties between high- and mid-latitude surface waters.  Antarctic Journal of the United States.  27: 162-164.

Sosik, H. M. and B. G. Mitchell.  1991.  Absorption, fluorescence and quantum yield for growth in nitrogen-limited Dunaliella tertiolecta.  Limnology and Oceanography.  36: 910-921

Sosik, H. M., S. W. Chisholm and R. J. Olson.  1989.  Chlorophyll fluorescence from single cells: Interpretation of flow cytometric signals.  Limnology and Oceanography.  34: 1749-1761.

Other Publications

Sieracki, M.E. Benfield, M., Hanson, A., Davis, C., Pilskaln, C.H., Checkley, D., Sosik, H.M., Ashjian, C., Culverhouse, P., Cowen, R., Lopes, R., Balch, W., Irigoien, X. 2008. Optical plankton imaging and analysis systems for ocean observation. 2009. OceanObs’09, 11 p. (peer-reviewed)

Sosik, H.M. and R.J. Olson.  2008.  Phytoplankton community regulation on the New England Shelf: Insights from automated submersible flow cytometry.  Proceedings of Ocean Optics XIX, 12 pp. 

Campbell, L., R. J. Olson, and H. M. Sosik.  2008.  First toxic Dinophysis bloom observed in the Gulf of Mexico, USA.Harmful Algae News 36: 10-11.

Lyon, P., R. Arnone, R. Gould, Z. Lee, P. Martinolich, S. Ladner, B. Casey, H. Sosik, D. Vandemark, H. Feng, R. Morrison.  2007. Automated validation of satellite derived coastal optical products.  In: R.J. Frouin (ed.), Proc. SPIE 6680.  DOI: 10.1117/12.736576. 

Sosik, H.M. and R.J. Olson.  2006. New technologies to acquire time series of phytoplankton community structure: submersible image-in-flow cytometry and automated taxonomic Classification.  Proceedings of Ocean Optics XVIII.  p. 1-13.

Fredericks, J.J., J.H. Trowbridge, T.C. Austin, H.M. Sosik, R.J. Olson, P.A. Traykovski.  2006.  Martha's Vineyard Coastal Observatory:  Existing Infrastructure for interdisciplinary science. Proceedings of the IEEE Fourth International Workshop on Scientific Use of Submarine Cables and Related Technologies; 4 pp.

Sosik, H.M.  2005.  Biographical sketch.  Oceanography. 18: 213.

Johnsen, S. and H.M. Sosik. What does the ocean really look like?  Oceanus.  43(2): 24-28.

Edson, J., Gallager, S., Hintsa, E., Olson, R., Preisig, J., Sosik, H., Traykovski, P. and Trowbridge, J.  2004.  Plugging In at the Martha's Vineyard Coastal Observatory.  ORION newsletter.  ORION Project Office. 1(2): 4-7.

Jahnke, R., Bane, J., Barnard, A., Barth, J., Chavez, F., Dam, H., Dever, E., DiGiacomo, P., Edson, J., Geyer, R., Glenn, S., Johnson, K., Moline, M., O'Donnell, J., Oltman-Shay, J., Persson, O., Schofield, O., Sosik, H., and Terrill, E.  2004.  Coastal Observatory Research Arrays: A Framework for Implementation Planning.  Report on the CoOP CORA Workshop.  Skidaway Institute of Oceanography Technical Report Draft TR-03-01.  69 pp.

Sosik, H.M., R.J. Olson, M.G. Neubert, A. Shalapyonok, and A.R. Solow.  2002.  Time series observations of a phytoplankton community monitored with a new submersible flow cytometer.  Proceedings of Ocean Optics XVI, 12 pp.   

Morrison, J.R and Sosik, H.M.  2002.  Inherent optical properties in New England coastal waters: decomposition into contributions from optically important constituents.  Proceedings of Ocean Optics XVI, 10 pp.  

Green, R.E., H.M. Sosik, and R.J. Olson.  2002.  The contribution of phytoplankton and non-phytoplankton particles to inherent and apparent optical properties in New England continental shelf waters.  Proceedings of Ocean Optics XVI, 11 pp.  

Martin Traykovski, L.V., W.L. Miller and H.M. Sosik.  2002.  A new approach to evaluating spatial variability of photochemistry based on characterization of optical water type from satellites.  Proceedings of Ocean Optics XVI, 9 pp.  

Mitchell, G., A. Bricaud, K. Carder, J. Cleveland, G. Ferrari, R. Gould, M. Kahru, M. Kishino, H. Maske, T. Moisan, L. Moore, N. Nelson, D. Phinney, R. Reynolds, H. Sosik, D. Stramski, S. Tassan, C. Trees, A. Weidemann, J. Weiland, and A. Vodacek.  2000.  Determination of spectral absorption coefficients of particles, dissolved material, and phytoplankton for discrete water samples.  In: Ocean optics protocols for satellite ocean color sensor validation, revision 2, G. S. Fargion and J. L. Mueller (eds.), NASA/TM 2000-209966. NASA, Goddard Space Flight Center, Greenbelt, Maryland, p. 125-153. 

Martin Traykovski, L. V. and H. M. Sosik.  2000.  Optical classification of northwest Atlantic water types based on satellite ocean colour data.  Proceedings of Ocean Optics XV.  12 pp.  

Sosik, H. M. and J. R. Morrison.  2000.  Analysis and visualization of inherent optical properties of the Gulf of Maine observed from a towed vehicle.  Proceedings of Ocean Optics XV.  11 pp.

DuRand, M. D., R. E. Green, H. M. Sosik, and R.J. Olson.  2000.  Diel variations in optical properties of Micromonas pusilla, a prasinophyte.  Proceedings of Ocean Optics XV.  11 pp.  

Green, R. E., H. M. Sosik, M. D. DuRand, and R. J. Olson.  2000.  Comparison of refractive index estimated from single-cell and bulk optical properties.  Proceedings of Ocean Optics XV.  9 pp.  

Sosik, H.M., R.E. Green and R.J. Olson.  1998.  Optical variability in coastal waters of the northwest Atlantic.  Proceedings of Ocean Optics XIV.  14 pp.  

Martin Traykovski, L. V. and H. M. Sosik.  1998.  Optical classification water types based on remotely-sensed ocean colour.  In: Ocean Optics XIV, S. G. Ackleson (ed.).  12 pp.  

Chekalyuk, A. M., R. J. Olson, and H. M. Sosik.  1997.  Pump-during-probe fluorometry of phytoplankton of phytoplankton: group specific photosynthetic characteristics from individual cell analysis.  In: Ocean Optics XIII, S. G. Ackelson and R. Frouin (eds.). Proc. SPIE 2963: 840-845.  

Sosik, H. M.  1995.  The role of phytoplankton photophysiological variability in optical modeling of marine primary production.  In: Proceedings of the International Colloquium on Photosynthesis and Remote Sensing, G. Guyot (ed.), EARSeL, pp. 251-259.

Sosik, H. M., M. Vernet and B. G. Mitchell. 1992.A comparison of particulate absorption properties between high- and mid-latitude surface waters.
Ant. J. U.S. 27: 162-164.


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