manuscript submitted to J. Geophys. Res., WOCE South Atlantic special issue, February 5, 1998 Frictionally modified flow in a deep ocean channel: Application to the Vema Channel by Johann H. Jungclaus and Michael Vanicek Institut für Meereskunde an der Universität Kiel Düsternbrooker Weg 20 24105 Kiel Germany email: jjungclaus@ifm.uni-kiel.de Abstract -------- The modification of the exchange flow in a deep southern hemisphere passage, resembling the Vema Channel, by frictionally induced secondary circulation is investigated numerically. The hydrostatic primitive equation model is a two-dimensional (a cross channelsection) version of the sigma - coordinate Princeton Ocean Model. The time dependent response of a stratified along channel flow, forced by barotropic or baroclinic pressure gradients, is examined. Near the bottom, where the along channel flow is retarded, there is cross channel Ekman flux which is associated with downwelling on the eastern side and upwelling on the western side of the channel. In the presence of stratification the cross channel flow rearranges the density structure which in turn acts on the along channel velocity via the thermal wind relation. The modification is shown to be part of an adjustment process that crucially influences the along channel flow not only within the bottom boundary layers but over the width of the channel and eventually shuts down the cross isobath Ekman flux. Complementing earlier studies on the evolution of bottom boundary layers and subsequent shutdown this paper adds the peculiar case where upwelling and downwelling favorable flow regions overlap and interact in a narrow channel. In the case of baroclinically driven flow of Antarctic Bottom Water through the Vema Channel the model reproduces the observed shape of the deep temperature profiles and their cross channel asymmetry. The model offers an explanation that is alternative, or supplementary, to inviscid multilayer hydraulic theory which was put forward in earlier studies. It explains the extremely thick bottom boundary layers in the center and on the western slope of the channel. The deep thermocline is spread out in the west and sharpened in the east and the coldest water is found on the eastern side of the deep trough. The modified density field reduces the along channel flow near the bottom and focuses it into a narrow jet on the eastern side of the channel.