Woods Hole Oceanographic Institution
Cruise Planning Synopsis
AT42-15: Ohman "CCE-LTER3" | |
Ship | |
| R/V Atlantis | |
Cruise Party | |
| Mark Ohman: Chief Scientist, Principal Investigator La Jolla, California USA 92093-0218 +1 858 534 2754 mohman@ucsd.edu |
Departure: Aug 5, 2019 | |
| San Diego | |
Arrival: Sep 6, 2019 | |
| San Diego | |
Operations Area | |
| Northeast Pacific, west of Pt. Conception | |
| Lat/Lon: 35° 0.0′ N / 122° 0.0′ W | |
| Depth Range: 0 / 3000 | |
| Will the vessel be operating within 200 NM of a foreign country? | N/A |
| Are visas or special travel documents required? | no |
Science Objectives | |
Our objectives are to understand and quantify key mechanisms that transport coastal production and populations offshore in the CCE region, including the magnitudes and length scales of transport and their climate sensitivities. The principal hypotheses we seek to test are: H1: Lateral transport dominated by the interaction of Ekman transport and westward propagating coastal filaments provides a significant flux of nutrients and organisms to offshore waters. H2: Carbon export associated with offshore transport is determined by in situ evolution of communities and nutrient regimes, and by subduction occurring largely at sharp frontal density gradients. The processes measured on this cruise will include primary and secondary production, net community production, carbonate system variables, grazing by microzooplankton and mesozooplankton, dissolved iron and ligand effects on phytoplankton growth, carbon and nitrogen cycling, and export of carbon and other elements in both particulate and dissolved forms. The pelagic food web will be characterized, extending from viruses, prokaryotic and eukaryotic microbes, micro- and meso-zooplankton, to nektonic organisms (the latter as acoustic backscatter) using state-of-the-art measurement methods. Most measurements will be made in a Lagrangian reference frame while following discrete water parcels for 3-5 days at a time. These water parcels will be selected to represent different stages in the temporal evolution of a coastal filament: i.e., nearshore near the upwelling source and presumed origin of the filament; somewhat further offshore, along the axis of the filament, as upwelled waters and entrained communities are advected offshore; and still further offshore, near the terminus of a filament, where export fluxes are expected to be elevated. Our analyses will extend from the ocean surface through the euphotic zone, and in some locations into the mesopelagic ocean to 1000 m or deeper. We also expect to conduct a brief Benthic Boundary Layer (BBL) study to understand the relationship between coastal iron supply in nearshore sediments and the flux of iron into the coastal ocean via coastal filaments. Our Broader Impacts activities will include seagoing research opportunities and training for multiple graduate students, undergraduate students and other volunteers, as well as regular communication with the general public via an online blog created by a graduate student. | |
Science Activities | |
Our basic cruise design is Lagrangian, i.e., we will be following individual water parcels rather than sampling on a fixed grid of stations. Each water parcel is selected based on real-time satellite imagery and in situ surveys (usually with a Moving Vessel Profiler). Once an appropriate water parcel is identified, a satellite-tracked sediment trap array is released and used to follow the parcel and associated plankton populations for 3-5 days at a time while we make a series of other measurements. Such measurements include CTD-rosette profiles, in situ imaging with an UVP5 plankton camera, seawater collections for in situ drifting incubations for growth and grazing experiments, shipboard deck incubations, Trace Metal CTD and Go-Flo casts for studies of iron limiation, zooplankton bongo net tows, MOCNESS vertically stratified net tows, live zooplankton collections for copepod egg production experiments, and other activities. Vertical export of carbon and other elements will be determined by drifting sediment traps and a geochemical method that measures Th:Ur disequilibrium. Continuous underway measurements will be made of O2:Ar ratios using a flow through mass spectrometer, CO2:pH using a custom carbonate system device, multi-spectral fluorescence using an Advanced Laser Fluorometer, multi-frequency acoustic backscatter using a Simrad (Kongsberg) EK-60, as well as standard flow-through measurements of T,S,O2, Chl-a fluorescence, Doppler currents, etc. A towed SeaSoar will be used to make larger-scale surveys of our study region toward the beginning and end of the cruise. A free-fall Moving Vessel Profiler (MVP) with computer-controlled winch will conduct local site surveys and analyze small-scale spatial gradient repeatedly throughout the cruise. Cross-frontal transects will be carried out that sample the gradient regions associated with coastal upwelling filaments, as well as the properties of the filament cores. Supporting instruments will include a Spray glider deployed from shore as well as a new Zooglider deployed and recovered from Atlantis. | |
Additional Info | |
| Pre-cruise Planning Meeting: Teleconference | |
| Meeting Notes: People will be in different time zones so we will need to coordinate carefully. | |
Stations: | |
| Station 1 Distance: 30 Days: 0.25 Latitude: 32° 51.632 N Longitude: 117° 40.146 W Station 2 Distance: 250 Days: 30 Latitude: 35° 0.0 N Longitude: 122° 0.0 W | |
Supporting documentation: | |
Funding |
| Funding Agency: NSF | |
| Grant or contract number: OCE-16-37632 |
Scientific Instrumentation for R/V Atlantis |
Shipboard Equipment | |||||||||||
| Bathymetry System 12 kHz | |||||||||||
| Bathymetry System 3.5 kHz | |||||||||||
| ADCP 75 kHz | |||||||||||
| A-Frame | |||||||||||
| Deionized Water System | |||||||||||
| Science Underway Seawater System | |||||||||||
| Navigation - Heading | |||||||||||
| Fume Hood | |||||||||||
| Navigation - Position | |||||||||||
| Crane | |||||||||||
Shipboard Communication | |||||||||||
| Basic Internet access via HiSeasNet | |||||||||||
| Is there a need to receive data from shore on a regular basis? | |||||||||||
| Is there a need to transfer data to shore on a regular basis? | |||||||||||
CTD/Water Sampling | |||||||||||
| 911+ Rosette 24-position, 10-liter bottle Rosette with dual T/C sensors | |||||||||||
Mocness ![]() | |||||||||||
| Biospherical underwater PAR (1000m depth limit) with reference Surface PAR | |||||||||||
| SBE43 oxygen sensor | |||||||||||
| Seapoint STM turbidity sensor | |||||||||||
| Wet Labs C*Star transmissometer (660nm wavelength) | |||||||||||
| Wet Labs ECO-AFL fluorometer | |||||||||||
Critical CTD Sensors | |||||||||||
| Trace Metal CTD Rosette (user-supplied) | |||||||||||
MET Sensors | |||||||||||
| Barometric Pressure | |||||||||||
| Air temperature | |||||||||||
| Relative Humidity | |||||||||||
| Wind speed and direction | |||||||||||
| Short Wave Solar Radiation | |||||||||||
Sample Storage | |||||||||||
| Climate Controlled Walk-in | |||||||||||
| Freezer -70°C 25 cu. ft. | |||||||||||
| Freezer -70°C 3.2 cu. ft. ea. | |||||||||||
| Refrigerator 8.6 cu. ft. | |||||||||||
| Storage Notes:
Also Freezer -18 C
At least 2 fume hoods required
| |||||||||||
Navigation | |||||||||||
| Will you be using Long Base Line (LBL) navigation? | no | ||||||||||
| How many nets? | null | ||||||||||
| How many tansponders? | null | ||||||||||
| Will you be using Ultra-short baseline (USBL) navigation? | no | ||||||||||
Navigation | |||||||||||
| GPS | |||||||||||
| Navigation Notes:
Continuous serial NMEA string containing GPS, depth, ship's speed is needed in laboratory for Moving Vessel Profiler computers (1 Hz, 1200 baud).
We will furnish an event log computer (laptop) for the bridge, with a similar (networked) computer for the main lab. | |||||||||||
Winches | |||||||||||
| CTD Winch with .322" Electro-mechanical wire | |||||||||||
| Hydro Winch with .25" hydro wire | |||||||||||
| Other Portable Winch | |||||||||||
| Winch Notes:
We need to discuss winch usage with all users.
Desirable, if possible, to have independent winches for:
- CTD-rosette (0.322")
- bongo tows (0.25" hydro)
- Trace Metal-rosette (user-supplied wire and rosette; need winch)
- MOCNESS (0.322" or 0.681" conducting, depending on deployment location) | |||||||||||
Wire use and application | |||||||||||
| Other | |||||||||||
| Trawl Winch with .681 fiber optic | |||||||||||
| Hydro Winch with .25" hydro wire | |||||||||||
| CTD Winch with .322" Electro-mechanical wire | |||||||||||
| Winch Notes:
Moving Vessel Profiler self-contained winch, fish, and Vectran cable (user-supplied; M. Ohman group). Weight of fish plus instruments ca. 300 lbs in air; roughly 200 lbs. in water. Deployed directly aft, winch bolted to deck on one side of A-frame.
Trace Metal sampling requires portable winch that will not contaminate coated wire for iron sampling (K. Barbeau group). Clean level wind needed. Non-metallic or clean stainless steel roller, no grease. Prefer deployed off starboard side. User will supply cable, block, rosette, water bottles. Trace Metal rosette to be located with clear access to trace metal clean van. Rosette weighs 500-600 lbs in air when fully loaded; weight in water not known.
SeaSoar tow-yowed ca. 300 m to surface. Multiple sensors (user-supplied) on fish. Standalone winch. Carl Mattson (SIO ET) will be in charge of this instrument.
Sediment trap array with surface float and satellite transmitter, holey sock drogue, and multiple sediment traps at depths from ca. 75 to 400 m. Ca. 100 lbs. in water. Upon recovery grappled, then recovered via A-frame.
Driftarray for grazing studies, with surface float and satellite transmitter, holey sock drogue, and multiple attachment points for bottles in mesh bags at depths between 10-100 m. < 75 lbs in water. Upon recovery grappled, then recovered by hand over the rail.
Zooglider (modifed Spray glider) to be deployed from crane, then either recovered by crane or from small boat. Weighs ca. 130 lbs in air, essentially neutrally buoyant in water. | |||||||||||
Standard Oceanographic Cables | |||||||||||
| |||||||||||
Portable Vans | |||||||||||
| Isotope Van | |||||||||||
| Science Van 1 | |||
| Type/size: 20 foot Trace Metal (Moffett) | Location: main deck, not far from Trace Metal rosette | ||
| Water: no supply; seawater drain hose desirable | Power:3 phase, 480 V | ||
| Science Van 2 | |||
| Type/size: 20 foot Isotope van w/ scintillation counter | Location: main deck | ||
| Water: yes | Power:yes | ||
Specialized Deck Equipment
| Mooring Deployment/Recovery Equipment Required: no | Type: |
| Cruise Specific Science Winch Required: yes | Type: MVP; Trace Metal; SeaSoar |
| Nets Required: yes | Type: 1-m MOCNESS (202-um); bongo |
Over the Side Equipment
Special Requirements
| Elecrical Power: yes | Identify 480 v, 3 phase, 40 amps for MVP winch on main deck aft |
| Equipment Handling: no | Identify: |
| Inter/intraship Communications: yes | Identify: We will bring an event logger for the bridge and main lab. |
| Science Stowage: yes | Identify: Extensive stowage for equipment, sample containers, etc. |
| Water: yes | Identify: u/w flow through seawater needs to be cleaned before cruise |
Additional Cruise Items/Activities
Hazardous Material
We generally store chemicals (ethanol, formalin, others) in an external Hazmat locker provided by the ship.
Radioactive Material
Additional Information
Short Wave Solar Radiation – change to ‘Long and short wave radiation.’ PAR sensor, 2pi
Checklist & Notes |
Checklist | |
| U.S. Customs Form: | no |
| Diplomatic Clearance: | no |
| Date Submitted: | |
| Date Approved: | |
| Agent Information: | |
| United States (San Diego, CA) PLEASE USE ERIC BENWAY AND DUTCH WEGMAN FOR ALL COMMUNICATIONS FOR BAE (ebenway@whoi.edu and dwegman@whoi.edu) FOR ALL VANS, Frame system and Tower. Please send shipments to B.A.E at the following address: 2205 East Belt Foot of Sampson Street San Diego, CA 92113 P.O. Box 13308 San Diego, CA 92170-3308 Attn. Randy Butler / Dutch Wegman For All other miscellaneous boxes, envelopes etc., PLEASE SEND TO OUR AGENT via the following address: Master R/V Ship Name Attn: Scientist's Name / AT15-65 c/o Paxton, Shreve & Hays Inc. 453 54th Street Suite 101 San Diego, CA 92114 Contact: Tom Jenkins Phone: (619) 232-8941 Fax: (619) 232-3006 Telex: 6731029 SHREVE SDG Email: marineops@pshinc.net Note: Agent and WHOI contacts should be copied on all communications. It is requested that shipment information of any equipment be communicated to the Agent and WHOI contacts --------------------------------- ---------------------------- FOR SAN FRANSISCO: Master R/V Ship Name Attn: Scientist's Name c/o Vasile Tudoran Transport 819 Ohio Ave. Long Beach, CA 90804 Contact: Vasile Tudoran Phone: (562) 882-5590 Fax: (562) 434-9800 Email: vtudoran@aol.com Use above address for mail only; must be delivered five days prior to ship arrival in San Francisco. For all packages and larger items, send directly to the address below. Please notify Vasile Tudoran, vtudoran@aol.com, and dispatch@marineexpress.us in advance of all shipments R/V Ship Name Attn: Scientist's Name c/o Marine Express, Inc. 2900 Main St. Alameda, CA 94501 Contact: Troy Esch, Marine Express Operations Manager Phone: (510) 523-8900 Fax: (510) 523-6466 Note: Agent and WHOI contacts should be copied on all communications. It is requested that shipment information of any equipment be communicated to the Agent and WHOI | |
| Countries: | |
| n/a | |
| Notes: | |
| n/a | |
| Isotope Use Approval: | no |
| Isotope Notes: | |
| No need for Ships Rad van. Request is to put aboard 6 - 2mCi sealed sources of 85Kr to be transoport in and only used in a locked van. | |
| SCUBA Diving: | no |
Checklist | |
| SSSG Tech: | |
| Allison Heater (f), Catie Graver (f) | |
| Loading will take place at B.A.E. Shipyard in San Diego Ca. NEW 3/11: MAY 5 will drop IMET tower for Jeff Hare to set up instrumentation. May 6 - 7: Load 02 dk fwd framing system, tower and 02 dk vans and 01 deck vans. POWER and ETHERNET WILL BE NEEDED BY MAY 7th to 02 and 01 dk vans May 6-11: Science may work on vans on the 02 deck. But they should understand that the ships crew will not be able to help them during this time. A SSSG Tech will be made available for assistance. LIMITED ACCESS. May 11-13: complete full Mobilization and set up; loading remaining vans, cylinders and other equipment. San Francisco: Pier location: PIER 27 | |
| Atlantis will need to off load all ships vans EXCEPT CHEM VAN, prior to May 6th load date. Those vans will be stored at west coast van pool lot, then will be trucked to San Fran in time for Mobilzation around June 11-12th. Also WHOI vans will need "D.O.T." inspections before being trucked. Eric B and Chris G will work on this. PLEASE READ "Calnex Goals and Sampling Plan" for cruise plan information and more deck plans. This can be found in "supporting documentaion near top of synopsis". | |

