Woods Hole Oceanographic Institution

Cruise Planning Questionnaire

NAAMES September cruise


R/V Atlantis


Cruise Party

Michael Behrenfeld: Chief Scientist, Principal Investigator
Oregon State university Department of Botany and Plant Pathology, Cordley Hall 2082 Corvallis, Oregon USA 97331-2902
+1 541 737 5289

Departure: Woods Hole on Aug 31, 2017

Arrival: Woods Hole on Sep 25, 2017

Mobilization Date: Aug 27, 2017

Demobilization Date: Sep 28, 2017

Supporting documentation:

Operations Area: North Atlantic

Lat/Lon: 50° 0.0′ N / 40° 0.0′ W

Depth Range: 0 / 2000

Will the vessel be operating within 200 NM of a foreign country? Canada, Greenland
Are visas or special travel documents required? no

Science objectives

The North Atlantic Aerosols and Marine Ecosystems Study (NAAMES) is an interdisciplinary investigation addressing two primary science goals: (1) Define environmental and ecological controls on plankton communities and (2) Define linkages between ocean ecosystem properties and biogenic aerosols. Within these two broad goals, the NAAMES investigation focuses on identifying environment-ecosystem-aerosol interdependencies in the climate-sensitive North Atlantic. This ocean region hosts the largest annual plankton bloom in the global ocean and its impact on Earth’s radiative balance is particularly sensitive to biogenic aerosol emissions. Specific baseline science objectives of NAAMES are to (1) Characterize plankton ecosystem properties during primary phases of the annual cycle in the North Atlantic and their dependence on environmental forcings, (2) Determine how primary phases of the North Atlantic annual plankton cycle interact to recreate each year the conditions for an annual bloom, and (3) Resolve how remote marine aerosols and boundary layer clouds are influenced by plankton ecosystems in the North Atlantic. These objectives are accomplished by coupling autonomous in situ and satellite measurements sustained throughout the NAAMES investigation with short-term, coordinated ship and airborne campaigns that target critical events in the annual plankton cycle and focus on detailed system characterization. These direct observations are integrated with climate-ecosystem modeling to create a process-based understanding that allows improved interpretation of historical data records and improved predictions of future change.

Science Activities

The NAAMES investigation has a duration of 5 years and involves 4 field campaigns.  Each field campaign will share a common observation profile.  The first and second campaigns were conducted in November 2015 and May 2016, respectively, on the UNOLS R/V Atlantis.  For each campaign, ship-based measurements are accompanied by aircraft measurements.  The aircraft is a NASA C-130 stationed in Saint John’s Bay, Canada. The Atlantis is required for each field campaign due to requirements for foreward deck space for a full-sized aerosols van, deck space for a radioisotope van, and the large scientific complement (34 berths).  This global class vessel is also advantageous for the NAAMES project on account of sea-worthiness during field studies that span the annual cycle and familiarity of the science team gained during the first two campaigns.

Each field campaign involves a 26-day, roughly triangular-shaped ship transect. The ship’s direction around the transect triangle is scientifically irrelevant, allowing real-time adjustments based on prevailing and forecasted weather conditions and sea-states. Assuming a counterclockwise direction, the ship proceeds from Woods Hole to the turning point at 40° N. During this outbound leg, underway sampling is conducted, but not regular overboard deployments.  It is beneficial to make at least one stop during the outbound transect to conduct a ‘shake-down’ station of overboard operations.  Following the turn northward, the full complement of ship-based measurements begins and continues until the northern-most turning point (~55° to 60°N). During this primary latitudinal science leg, daily operations involve a sampling station that begins near dawn and continues through the day.  Station operations  include multiple CTD/Rosette casts.  Optical and other instruments mounted on the rosette for shallow casts but have depth limits <2000 m and will need to be removed before a deep cast.  Following a deep cast, additional shallow casts are conducted for water sampling and underwater light measurements.  Also during station, measurements will be made of downwelling light properties and water leaving radiances.  Once the primary science transect is complete and the northern-most turning point is reached, the return transect begins, with continuous in-line measurements conducted until the day before port arrival, but no additional station occupations anticipated.

In addition to water sampling and flow through seawater measurements, another key component of the NAAMES investigation is the measurement of aerosols.  For this aspect, key measurements are conducted from the Aersosols Van, located on the forward deck of the ship.  Aerosol measurements are conducted continuously while the wind is from the forward direction. These measurement have to be terminated when the wind is from the backward direction, due to contamination from the ship.  Thus, it is desired to keep the ship orientation favorable for aerosol samples for the greatest fraction of the time feasible (understanding that ship orientation during overboard castings is dictated by sea state and wire angle). 

Also during the field campaigns, deployments are made of autonomous profiling floats and surface drifters.  Deployments will occur along the N-S primary latitudinal science transect, with exact location dependent on station location and real-time information on regional mesoscale eddies.  Surface drifter deployments will target mesoscale eddy centers and will provide water parcel tracking capabilities that inform flight patterns for the C-130.   

Airborne deployments accompanying the ship measurements focus on the primary N-S latitudinal transect.  The airborne measurements include in situ aerosol sampling and remote sensing measurements with a hyperspectral ocean color sensor, a high resolution lidar, a polarimeter, and a downwelling irradiance sensor.  Aircraft measurements need to be highly coordinated with the ship, so regular communications between the two platforms is essential. Aircraft measurements begin shortly after takeoff, and continue during the transect to the ship.  Once arriving at the ship, a diversity of flight patterns are followed to characterize horizontal and vertical variability in ocean ecosystem and aerosol properties.  The aircraft transect also includes fly-overs of regions previously sampled by the ship, as tracked by the surface drifters.  These drifters essentially provide a ‘bread crumb trail’ that allows the aircraft to follow changes in system properties well after the ship has departed a given sampling station.  Once the primary science measurements are complete along the ship transect, the aircraft returns to base.

Pre-cruise planning meeting: Teleconference/Visit WHOI

Michael Behrenfeld traveled to WHOI for the pre-cruise planning meeting on March 17, 2015 for first NAAMES cruise. For second NAAMES cruise, the pre-cruise planning meeting was conducted by teleconference.


  Station 1
  Distance: 1100
  Days: 2
  Latitude: 60° 0.0’ N
  Longitude: 40° 0.0’ W

  Station 7
  Distance: 2200
  Days: null
  Latitude: 40° 0.0’ N
  Longitude: 40° 0.0’ W

Funding Agency: nasa #NNX15AF30G

- added nasa #NNX15AF30G on Nov 7, 2016 2:19 PM by Dr. Michael Joseph Behrenfeld

R/V Atlantis

Shipboard Equipment

Deionized Water System
Fume Hood
Navigation - Heading
Navigation - Position
Science Underway Seawater System
ADCP 75 kHz

Shipboard Communication

Basic Internet access via HiSeasNet
Is there a need to receive data from shore on a regular basis?
Is there a need to transfer data to shore on a regular basis?
Is there an expectation to use Skype or any other real-time video conference program?

CTD/Water Sampling

911+ Rosette 24-position, 10-liter bottle Rosette with dual T/C sensors
Biospherical underwater PAR (1000m depth limit) with reference Surface PAR
SBE43 oxygen sensor
Seapoint STM turbidity sensor
Wet Labs C*Star transmissometer (660nm wavelength)
Wet Labs ECO-AFL fluorometer
Wet Labs FLNTURTD Combination Flourometer and Turbidity Sensor

Critical CTD Sensors: 

Hydrographic Analysis Equipment

Dissolved Oxygen Titration System (Brinkmann Titrator)
Oxygen Sample Bottles (available in 150 ml sizes)

MET Sensors

Barometric Pressure
Air temperature
Relative Humidity
Wind speed and direction
Short Wave Solar Radiation

Sample Storage

Freezer -70°C 25 cu. ft.
Freezer -70°C 3.2 cu. ft. ea.
Refrigerator 8.6 cu. ft.
Scientific Walk-in Freezer

Storage Notes: is the -70oC 25 cu. ft. freezer a walk-in?


Will you be using Long Base Line (LBL) navigation? no

Will you be using Ultra-short baseline (USBL) navigation for other than Alvin operations? no



Navigation Notes: During long-term stations (36 - 48 h), it is desired to take samples following a surface drifter and, when not taking samples to maintain wind direction from the bow for aerosol sampling for as much time as sea state and other factors permit


CTD Winch with .322" Electro-mechanical wire

Winch Notes:

Wire Notes:
Slip ring required? no Number of conductors: 
Non-standard wire required? no Type: 
Traction winch required? no Describe: 

Portable Vans

Isotope Van

Other Science Vans:

Other Science Vans:
Science Van 1
Type/size: 20' x 8' x 8' shipping container - see additional notes Location: 02 deck
Water: no Power:120 amps 'clean' continuous power at 110 VAC
Science Van 2
Type/size: 20' x 8' x 8' shipping container - see additional notes Location: 02 deck
Water: no Power:see additional notes
Science Van 3
Type/size: 20' x 8' x 8' shiping container Location: 02 deck
Water: no Power:120 amps 'clean' power
Science Van 4
Type/size: 20' x 8' x 8' shiping container Location: 02 deck forward
Water: no Power:120 amps 'clean' power
Science Van 5
Type/size: 20' x 8' x 8' shiping container Location: 02 deck aft
Water: no Power:no

Specialized Deck Equipment

Mooring Deployment/Recovery Equipment Required: no Type: 
Cruise Specific Science Winch Required: no Type: 
Nets Required: no Type: 

Over the Side Equipment

Will you be bringing any equipment (winches, blocks, etc.) that lowers instruments over the side? yes

  1. NOAA SeaSweep
  2. Peter Guabe transducer pole
  3. Peter Gaube mini-CTD system for underway casts

Special Requirements

Elecrical Power: yes Identify: Most of power must be clean and able to run with UPS
Equipment Handling: yes Identify: hand held deployment of optical sensor / bucket samples of surface seawater on station
Inter/intraship Communications: yes Identify: communications with C130 aircraft
Science Stowage: yes Identify: regular access to science sample containers and lab supplies
Water: yes Identify: plumbing for clean flow through seawater system needs to be cleaned prior to cruise

Additional Cruise Items/Activities

Explosive Devices: no
Portable Air Compressors: yes
Flammable Gases: yes
Small Boat Operations: no
SCUBA Diving Operations: no

Hazardous Material

Will hazardous material be utilized? yes

Radioactive Material

Radioiosotopes: yes

Additional Information

Is night time work anticipated on this cruise? yes

Specialized tech support (Seabeam, coring, other): Night operations are common during NAAMES cruises, including seasweep, CTD, drifter, and float deployments

Other required equipment and special needs: With respect to the CTD/rosette - it would be helpful to have a 36 place rosette if available to facilitate water sampling requirements.  If a 24 place rosette is the largest available, it would helpful if this was equipped with 12 L Niskins.  Also, it is critical that any black o-rings on the Niskin bottles be replaced with the orange silicone o-rings, as the black versions are toxic and will have serious impacts on many of the sensitive biological measurements made during the cruise.

With respect to the C-star transmissometer and FLNTURTD requested above, it is desired that these are mounted on the CTD/rosette system for water column profiling.

With respect to science portable vans:  We are currently anticipating 5 portable science vans for the cruise: a RAD van provided by UNOLS and a storage van from NOAA are on the aft port side and 3 aerosol vans are on the forward 02 deck. The aerosol vans are 20’x8’x8’ shipping containers.  For the Scripps van, power requirements are 120 amps “clean” continuous power at 110 VAC.  Lynn Russel will provide a 408 transformer. For the UNOLS supplied van, power requirements are  25 amps "clean" power and 14.1 amps dirty power at 110 VAC.  The UCSC team has an additional 11 amp clean + 11 amp dirty power requirement for their mass spectrometer, but where this souce is depends on where the instrument is located (i.e., either in the van or wet lab).  A crane is required to load van (15000 lb) onto “feet” bolted to 02 deck.  A crane is again required to load inlet (300 lb) on top of van while it is secured.  Two gas cylinders (dry air, standard size) need to be secured external to van (request a 2x2 rack be mounted on deck adjacent to back of van).

We would also like to request, if possible, phone installation in the Scripps van (the use of walkie talkies is not advised as they interfere with the mass spectrometers in the van)

Date Submitted: Nov 7, 2016 3:06 PM by Dr. Michael Joseph Behrenfeld