From projects funded 2012 - present

Aluru N, Deak KL, Jenny MJ, Hahn ME. Developmental exposure to valproic acid alters the expression of microRNAs involved in neurodevelopment in zebrafish. Neurotoxicology and Teratology. 2013;40(0):46-58. doi: PubMed Central PMCID: PMC3895482.

Aluru N, Kuo E, Helfrich LW, Karchner SI, Linney EA, Pais JE, et al. Developmental exposure to 2,3,7,8-tetrachlorodibenzo-p-dioxin alters DNA methyltransferase (dnmt) expression in zebrafish (Danio rerio). Toxicol Appl Pharmacol. 2015;284(2):142-51. Epub 2015/03/04. doi:  PubMed PMID: 25732252; PubMed Central PMCID: PMC4408251.

Anderson D, Keafer B, McGillicuddy D, Solow A, Kleindinst J. Improving the accuracy and utility of harmful algal bloom forecasting systems. Biological and Geological Perspectives of Dinoflagellates, The Micropaleontological Society, Special Publications, Geological Society, London. 2013;5:133-40. PubMed Central PMCID: PMC in process.

Anderson DM, Couture DA, Kleindinst JL, Keafer BA, McGillicuddy JDJ, Martin JL, et al. Understanding interannual, decadal level variability in paralytic shellfish poisoning toxicity in the Gulf of Maine: The HAB Index. Deep Sea Research Part II: Topical Studies in Oceanography. 2014;103:264-76. doi: PubMed Central PMCID: PMC4058790.

Anderson DM, Keafer BA, Kleindinst JL, McGillicuddy Jr DJ, Martin JL, Norton K, et al. Alexandrium fundyense cysts in the Gulf of Maine: Long-term time series of abundance and distribution, and linkages to past and future blooms. Deep Sea Research Part II: Topical Studies in Oceanography. 2014;103:6-26. doi: PubMed Central PMCID: PMC4085992.

Anderson DM, McGillicuddy Jr DJ, DeGrasse SL, Sellner KG, Bricelj VM, Turner JT, et al. Harmful Algae in the Gulf of Maine: Oceanography, Population Dynamics, and Toxin Transfer in the Food Web. Deep Sea Research Part II: Topical Studies in Oceanography. 2014;103:1-376. doi: PubMed Central PMCID: PMC (edited volume, PMCID not applicable).

Aretxabaleta AL, Butman B, Signell RP, Dalyander PS, Sherwood CR, Sheremet VA, et al. Near-bottom circulation and dispersion of sediment containing Alexandrium fundyense cysts in the Gulf of Maine during 2010–2011. Deep Sea Research Part II: Topical Studies in Oceanography. 2014;103(0):96-111. doi: PubMed Central PMCID: PMC4451834.

Brosnahan ML, Farzan S, Keafer BA, Sosik HM, Olson RJ, Anderson DM. Complexities of bloom dynamics in the toxic dinoflagellate Alexandrium fundyense revealed through DNA measurements by imaging flow cytometry coupled with species-specific rRNA probes. Deep Sea Research Part II: Topical Studies in Oceanography. 2014;103(0):185-98. doi: PubMed Central PMCID: PMC4039218.

Butman B, Aretxabaleta AL, Dickhudt PJ, Dalyander PS, Sherwood CR, Anderson DM, et al. Investigating the importance of sediment resuspension in Alexandrium fundyense cyst population dynamics in the Gulf of Maine. Deep Sea Research Part II: Topical Studies in Oceanography. 2014;103(0):79-95. doi: PubMed Central PMCID: PMC4185196.

Deeds JR, Petitpas CM, Shue V, White KD, Keafer BA, McGillicuddy Jr DJ, et al. PSP toxin levels and plankton community composition and abundance in size-fractionated vertical profiles during spring/summer blooms of the toxic dinoflagellate Alexandrium fundyense in the Gulf of Maine and on Georges Bank, 2007, 2008, and 2010: 1. Toxin levels. Deep Sea Research Part II: Topical Studies in Oceanography. 2014;103(0):329-49. doi: PubMed Central PMCID: PMC4112541.

DeGroot DE, Franks DG, Higa T, Tanaka J, Hahn ME, Denison MS. Naturally Occurring Marine Brominated Indoles Are Aryl Hydrocarbon Receptor Ligands/Agonists. Chem Res Toxicol. 2015;28(6):1176-85. Epub 2015/05/23. doi: [doi]. PubMed PMID: 26001051; PubMed Central PMCID: PMC4469569.

Feary DA, Burt JA, Bauman AG, Al Hazeem S, Abdel-Moati MA, Al-Khalifa KA, et al. Critical research needs for identifying future changes in Gulf coral reef ecosystems. Marine Pollution Bulletin. 2013;72(2):406-16. doi: PubMed Central PMCID: PMC4118590.

Fernandes LF, Hubbard KA, Richlen ML, Smith J, Bates SS, Ehrman J, et al. Diversity and toxicity of the diatom Pseudo-nitzschia Peragallo in the Gulf of Maine, Northwestern Atlantic Ocean. Deep Sea Research Part II: Topical Studies in Oceanography. 2014;103(0):139-62. doi: PubMed Central PMCID: PMC4133141.

Ganju N, Brush M, Rashleigh B, Aretxabaleta A, del Barrio P, Grear J, et al. Progress and Challenges in Coupled Hydrodynamic-Ecological Estuarine Modeling. Estuaries and Coasts. 2015:1-22. doi: PubMed Central PMCID: PMC in process.

Halliday E, Ralston DK, Gast RJ. Contribution of sand-associated enterococci to dry weather water quality. Environ Sci Technol. 2015;49(1):451-8. Epub 2014/12/06. doi: PubMed PMID: 25479559; PubMed Central PMCID: PMC4304835.

Hubbard KA, Olson CE, Armbrust EV. Molecular characterization of Pseudo-nitzschia community structure and species ecology in a hydrographically complex estuarine system (Puget Sound, Washington, USA). Marine Ecology Progress Series. 2014;507:39-55. doi: 10.3354/meps10820 PubMed Central PMCID: PMC in process.

Ishikawa A, Hattori M, Ishii K-I, Kulis DM, Anderson DM, Imai I. In situ dynamics of cyst and vegetative cell populations of the toxic dinoflagellate Alexandrium catenella in Ago Bay, central Japan. Journal of Plankton Research. 2014;36(5):1333-43. doi: PubMed Central PMCID: PMC4161227.

John U, W. Litaker, M. Montresor, S. Murray, M.L. Brosnahan, and D.M. Anderson. Proposal to reject the name Gonyaulax catenella (Alexandrium catenella) (Dinophyceae). Taxon. 2014;63(4):932-3. doi: PubMed Central PMCID: PMC4268871.

John U, Litaker RW, Montresor M, Murray S, Brosnahan ML, Anderson DM. Formal Revision of the Alexandrium tamarense Species Complex (Dinophyceae) Taxonomy: The Introduction of Five Species with Emphasis on Molecular-based (rDNA) Classification. Protist. 2014;165(6):779-804. doi: PubMed Central PMCID: PMC4457362.

Kleindinst JL, Anderson DM, McGillicuddy Jr DJ, Stumpf RP, Fisher KM, Couture DA, et al. Categorizing the severity of paralytic shellfish poisoning outbreaks in the Gulf of Maine for forecasting and management. Deep Sea Research Part II: Topical Studies in Oceanography. 2014;103(0):277-87. doi: PubMed Central PMCID: PMC4112480.

Koch F, Kang Y, Villareal TA, Anderson DM, Gobler CJ. A novel immunofluorescence flow cytometry technique detects the expansion of brown tides caused by Aureoumbra lagunensis to the Caribbean Sea. Appl Environ Microbiol. 2014;80(16):4947-57. Epub 2014/06/08. doi: PubMed PMID: 24907319; PubMed Central PMCID: PMC4135766.

Li Y, He R, McGillicuddy Jr DJ. Seasonal and interannual variability in Gulf of Maine hydrodynamics: 2002–2011. Deep Sea Research Part II: Topical Studies in Oceanography. 2014;103(0):210-22. doi: PubMed Central PMCID: PMC4451839.

Luo CS, Liang JR, Lin Q, Li C, Bowler C, Anderson DM, et al. Cellular responses associated with ROS production and cell fate decision in early stress response to iron limitation in the diatom Thalassiosira pseudonana. J Proteome Res. 2014;13(12):5510-23. Epub 2014/11/06. doi: PubMed PMID: 25372880; PubMed Central PMCID: PMC4261981.

McGillicuddy Jr DJ, Brosnahan ML, Couture DA, He R, Keafer BA, Manning JP, et al. A red tide of Alexandrium fundyense in the Gulf of Maine. Deep Sea Research Part II: Topical Studies in Oceanography. 2014;103(0):174-84. doi: PubMed Central PMCID: PMC4142651.

McGillicuddy Jr DJ, Townsend DW, Keafer BA, Thomas MA, Anderson DM. Georges Bank: A leaky incubator of Alexandrium fundyense blooms. Deep Sea Research Part II: Topical Studies in Oceanography. 2014;103(0):163-73. doi: PubMed Central PMCID: PMC4072335.

Moore SK, Bill BD, Hay LR, Emenegger J, Eldred KC, Greengrove CL, et al. Factors regulating excystment of in Puget Sound, WA, USA. Harmful Algae. 2015;43:103-10. Epub 2015/06/26. doi: PubMed PMID: 26109923; PubMed Central PMCID: PMC4476272.

Petitpas CM, Turner JT, Deeds JR, Keafer BA, McGillicuddy Jr DJ, Milligan PJ, et al. PSP toxin levels and plankton community composition and abundance in size-fractionated vertical profiles during spring/summer blooms of the toxic dinoflagellate Alexandrium fundyense in the Gulf of Maine and on Georges Bank, 2007, 2008, and 2010: 2. Plankton community composition and abundance. Deep Sea Research Part II: Topical Studies in Oceanography. 2014;103(0):350-67. doi: PubMed Central PMCID: PMC in process.

Pilskaln CH, Anderson DM, McGillicuddy DJ, Keafer BA, Hayashi K, Norton K. Spatial and temporal variability of Alexandrium cyst fluxes in the Gulf of Maine: Relationship to seasonal particle export and resuspension. Deep Sea Research Part II: Topical Studies in Oceanography. 2014;103(0):40-54. doi: PubMed Central PMCID: PMC4243940.

Pilskaln CH, Hayashi K, Keafer BA, Anderson DM, McGillicuddy Jr DJ. Benthic nepheloid layers in the Gulf of Maine and Alexandrium cyst inventories. Deep Sea Research Part II: Topical Studies in Oceanography. 2014;103(0):55-65. doi: PubMed Central PMCID: PMC4238928.

Ralston DK, Keafer BA, Brosnahan ML, Anderson DM. Temperature dependence of an estuarine harmful algal bloom: Resolving interannual variability in bloom dynamics using a degree-day approach. Limnol Oceanogr. 2014;59(4):1112-26. doi: PubMed Central PMCID: PMC4237216.

Townsend DW, McGillicuddy Jr DJ, Thomas MA, Rebuck ND. Nutrients and water masses in the Gulf of Maine–Georges Bank region: Variability and importance to blooms of the toxic dinoflagellate Alexandrium fundyense. Deep Sea Research Part II: Topical Studies in Oceanography. 2014;103(0):238-63. doi: PubMed Central PMCID: PMC 4448144.

Vahtera E, Crespo BG, McGillicuddy Jr DJ, Olli K, Anderson DM. Alexandrium fundyense cyst viability and germling survival in light vs. dark at a constant low temperature. Deep Sea Research Part II: Topical Studies in Oceanography. 2014;103(0):112-9. doi: PubMed Central PMCID: PMC4112483.

Velo-Suarez L, Brosnahan ML, Anderson DM, McGillicuddy Jr DJ. A quantitative assessment of the role of the parasite Amoebophrya in the termination of Alexandrium fundyense blooms within a small coastal embayment. PloS one. 2013;8(12):e81150. doi: PubMed Central PMCID: PMC3852033.

Wang L, Zhang J, Duan J, Gao X, Zhu W, Lu X, et al. Programming and Inheritance of Parental DNA Methylomes in Mammals. Cell. 2014;157(4):979-91. doi: PubMed Central PMCID: PMC4096154.

From projects funded 2003 - 2011

Acinas, S.G., Sarma-Rupavtarm, R., Klepac-Ceraj, V. and Polz, M.F., 2005. PCR induced sequence artifacts and bias: insights from two 16S rRNA clone libraries constructed from the same sample. Appl. Environ. Microbiol, 71: 8966-8969.

Amaral-Zettler, L.A., Rocca, J.D., LaMontagne, M.G., Dennett, M.R. and Gast, R.J., in press. Changes in microbial community structure in the wake of Hurricanes Katrina and Rita. Environmental Science and Technology.

Anderson, D.M., 2008. Harmful algal blooms and ocean observing systems: needs, present status and future potential. In: Fisheries for Global Welfare and Environment, Terrapub, Tokyo, 317-334 pp.

Anderson, D.M., Burkholder, J.M., Cochlan, W.P., Glibert, P.M., Gobler, C.J., Heil, C.A., Kudela, R., Parsons, M.L., Rensel, J.E., Townsend, D.W., Trainer, V.L., Vargo, G.A., In press. Harmful algal blooms and eutrophication: Examples of linkages from selected coastal regions of the United States. Harmful Algae.

Anderson, D.M., Bruce A. Keafer, Dennis J. McGillicuddy Jr., Michael J. Mickelson, Kenneth E. Keay, P. Scott Libby, James P. Manning, Charles A. Mayo, David K. Whittaker, J. Michael Hickey, Ruoying He, Daniel R. Lynch, Keston W. Smith et al., 2005. Initial observations on the 2005 Alexandrium fundyense bloom in southern New England: general patterns and mechanisms. Deep-Sea Research II(52): 2856-2876.

Aretxabaleta, A.L., McGillicuddy, D.J., Smith, K.W. and Lynch, D.R., 2008. Model Simulations of the Bay of Fundy Gyre: 1. Climatological Results. Journal of Geophysical Research, 113(C10027): doi:10.1029/2007JC004480.

Aretxabaleta, A.L., McGillicuddy, D.J., Smith, K.W., Manning, J.P. and Lynch, D.R., Submitted. Model Simulations of the Bay of Fundy Gyre: 2. Hindcasts for 2005-2007 Reveal Interannual Variability in retentiveness. Journal of Geophysical Research.

Backer, L.C. and McGillicuddy, D.J., 2006. Harmful Algal Blooms: At the Interface Between Coastal Oceanography and Human Health. Oceanography, 19(2): 94-106.

Bogomolni, A.L. Gast, R.J., Ellis, J.C., Dennett, M., Pugliares, K.R., Lentell, B.J., Moore, M.J., 2008. Victims or Vectors: a survey of marine vertebrate zoonoses from coastal waters of the Northwest Atlantic. Diseases of Aquatic Organisms, 81: 13-38.

Dethlefsen, L., Huse, S., Sogin, M.L. and Relman, D.A., 2008. The Pervasive Effects of an Antibiotic on the Human Gut Microbiota, as Revealed by Deep 16S rRNA Sequencing. PLoS Biology, 6(11): e280.

Dyble, J., P., Dusek, E., Hitchcock, G., Holland, F., Laws, E., Lerczak, J., McGillicuddy, D.J., Minnett, P., Moore, S., O’Kelly, C., Solo-Gabriel, H., and J. Wang., 2008. Environmental controls, oceanography and population dynamics of pathogens and harmful algal blooms: Connecting sources to human exposure. Environmental Health, 7(2:55): doi:10.1186/1476-069X-7-S2-S5.

Ehrenreich, I.M., Waterbury, J.B. and Webb, E.A., 2005. Distribution and diversity of natural product genes in marine and freshwater cyanobacterial cultures and genomes. Applied and Environmental Microbiology, 71(11), 7401-7413.

Erdner, D.L. and Anderson, D.M., 2006. Global transcriptional profiling of the toxic dinoflagellate Alexandrium fundyense using Massively Parallel Signature Sequencing. BMC Genomics, 7(88): 1-11.

Erdner, D.L., Dyble, J., Parsons, M.L., Stevens, R.C., Hubbard, K.A., Wrabel, M.L,, Moore, S.K., Lefebvre, K.A., Anderson, D.M., Bienfang, P., Bidigare, R.R., Parker, M.S., Moeller, P., Brand, L.E., Trainer, V.L., 2008. A unified approach to the challenge of harmful algal blooms. Environmental Health, 7(2): S2.

Glibert, P.M., Azanza, R., Burford, M., Furuya, K., Abal, E., Al-Azri, A., Al-Yamani, F., Andersen, P., Anderson, D.M., 2008. Ocean urea fertilization for carbon credits poses high ecological risks. Marine Pollution Bulletin, 56: 1049-1056.

He, R. and McGillicuddy, D.J., 2008. The Historic 2005 Toxic Bloom of Alexandrium fundyense in the western Gulf of Maine - Part 1: In Situ Observations of Coastal Hydrography and Circulation. Journal of Geophysical Research, 113(C07039): doi:10.1029/2007JC004601.

He, R., McGillicuddy, D.J., Keafer, B.A. and Anderson, D.M., 2008. The Historic 2005 Toxic Bloom of Alexandrium fundyense in the Western Gulf of Maine - Part 2: Coupled Bio-physical Numerical Modeling. Journal of Geophysical Research, 113(C07040): doi:10.1029/2007JC004602.

Heisler, J., P. Glibert, J. Burkholder, D. Anderson, W. Cochlan, W. Dennison, C. Gobler, Q. Dortch, C. Heil, E.Humphries, A. Lewitus, R. Magnien, H. Marshall, K. Sellner, D. Stockwell, D. Stoecker, M. Suddleson., In press. Eutrophication and harmful algal blooms: A scientific consensus. Harmful Algae.

Ho, A.Y.T. et al., Submitted. Seasonal variation in size-fractionated phytoplankton biomass and production along a eutrophic gradient in Hong Kong waters. Marine Ecology Progress Series.

Huber, J.A., Mark Welch D.B., Morrison H.G., Huse S.M., Neal P.R., Butterfield D.A., Sogin M.L., 2007. Microbial population structures in the deep marine biosphere, Science, pp. 97-100.

Hunt, D.E., Klepac-Ceraj, V., Acinas, S.G., Gautier, C., Bertilsson, S., Polz, M.F., 2006. Evaluation of 23S rRNA PCR Primers for Use in Phylogenetic Studies of Bacterial Diversity, Applied and Environmental Microbiology, 72(3), 2221-2225.

Hunt, D.E., 2008. Aquatic microenvironments in bacterial ecology and diversity. Ph.D. Thesis, MIT Cambridge.

Hunt, D.E., Gevers, D., Vahora, N.M. and Polz, M.F., 2008a. Conservation of the chitin utilization pathway in the Vibrionaceae. Applied and Environmental Microbiology, 74(1): 44-51.

Hunt, D.E., L.A. David, D. Gevers, S.P. Preheim, E.J. Alm, M.F. Polz., 2008b. Resource partitioning and sympatric differentiation among closely related bacterioplankton. Science, 320: 1081-1085.

Huse, S.M., L. Dethlefsen, J.A. Huber, D.M. Welch, D.A. Relman, M.L. Sogin., 2008. Exploring Microbial Diversity and Taxonomy Using SSU rRNA Hypervariable Tag Sequencing. PLoS Genetics, 4(11): e1000255.

Huse, S.M., Huber, J.A., Morrison, H.G., Sogin, M.L. and Welch, D.M., 2007. Accuracy and quality of massively parallel DNA pyrosequencing. Genome Biol, 8(7:R143): PMID: 17659080.

Joss, M.J. et al., Submitted. ACID: Annotation of cassette and integron data. Bioinformatics.

Juhl, A.R., Martins, C.A. and Anderson, D.M., 2008. Toxicity of Alexandrium lusitanicum to gastropod larvae is not caused by paralytic-shellfish-poisoning toxins. Harmful Algae, 7: 567-573.

Keijser, B.J.F., E. Zaura, S.M. Huse, J.M.B.M. van der Vossen, F.H.J. Schuren, R.C. Montijn, J.M. ten Cate, W. Crielaard., 2008. Pyrosequencing Analysis of the Oral Microflora of Healthy Adults. Journal of Dental Research, 87(11): 1016-1020.

Kite-Powell, H., L.E. Fleming, L.C. Backer, E.M. Faustman, P. Hoagland, A. Tsuchiya, L.R. Younglove, B.A. Wilcox, R.J. Gast., 2008. Linking the oceans to public health: current efforts and future directions. Environmental Health, 7(Suppl 2): S6, doi:10.1186/1476-069X-7-S2-S6.

Klepac-Ceraj, V., Ceraj, I. and Polz, M.F., 2006. CLUSTERER: extendable java application for sequence grouping and cluster analyses. Online J. of Bioinformatics, 7: 15-21.

Lasek-Nesselquist, E., A. Bogomolni, R. Gast, D.M. Welch, J.C. Ellis, M.L. Sogin, M. Moore., 2008. Molecular characterization of Giardia intestinalis haplotypes in marine animals: variation and zoonotic potential. Diseases of Aquatic Organisms, 81: L39-51.

Laws, E.A., Fleming, L.E. and Stegeman, J.J., 2008. Centers for Oceans and Human Health: Contributions to an emerging discipline. Environmental Health, 7(Suppl 2):S1.

Lerczak, J.A., Geyer, W.R. and Ralston, D.K., In press. The Temporal Response of the Length of a Partially-Stratified Estuary to Changes in River Flow and Tidal Amplitude. Journal of Physical Oceanography.

Lilly, E.L., Halanych, K. and Anderson, D.M., 2007. Species boundaries and global biogeography of the dinoflagellate “A. tamarense” complex of the dinoflagellate genus Alexandrium (Dinophyceae). Journal of Phycology, 43: 1329-1338.

Manning, J.P., McGillicuddy, D.J., Pettigrew, N.R., Churchill, J.H. and Incze, L.S., Submitted. Drifter Observations of the Gulf of Maine Coastal Current. Continental Shelf Research.

Marcelino, L.A., Backman, V., Donaldson, A., Steadman, C., Thompson, J.R., Preheim, S.P., Lien, C., Lim, E., Veneziano, D., Polz, M.F., 2006. Accurately quantifying low-abundant targets amid similar sequences by revealing hidden correlations in oligonucleotide microarray data. Proceedings of the National Academy of Sciences, 103: 13629-13634.

Martins, C.A., 2006. Functional genomics of a non-toxic Alexandrium lusitanicum culture. Ph.D. Thesis, MIT/WHOI Cambridge/Woods Hole.

McCauley, L.A.R., Erdner, D.L., Nagai, S., Richlen, M.L. and Anderson, D.M., In press. Biogeographic analysis of the globally distributed harmful algal bloom species Alexandrium minutum (Dinophyceae) based on rRNA gene sequences and microsatellite markers. J. Phycology.

Messerli, S.M. and Greenberg, R.M., 2006. Cnidarian toxins acting on voltage-gated ion channels. Marine Drugs, 4: 70-81.

Nagai, S., L. McCauley, N. Yasuda, D.L. Erdner, D.M. Kulis, Y. Matsuyama, S. Itakura and D.M. Anderson, 2006. Development of microsatellite markers in the toxic dinoflagellate Alexandrium minutum (Dinophyceae). Molecular Ecology Notes, 6: 756-758.

Polz, M.F., Hunt, D.E., Preheim, S.P. and Weinreich, D.M., 2006. Patterns and mechanisms of genetic and phenotypic differentiation in marine microbes. Royal Society of London, 361: 2009-2021

Pope, W.H., Weigele, P. R., Chang, J., Pedulla, M. L., Ford, M. E., Houtz, J. M., Jiang, W., Chiu, W., Hatfull, G. F., Hendrix, R. W., King, J., 2007. Genome Sequence, Structural Proteins, and Capsid Organization of the Cyanophage Syn5: a "Horned" Bacteriophage of Marine Synechococcus. Journal of Molecular Biol, 368: 966-981.

Ralston D.K., McGillicuddy, D.J. and Townsend, D.W., 2007. Asynchronous vertical migration and bimodal distribution of motile phytoplankton. Journal of Plankton Research, 29(9): 803-821.

Reddy, C.M., Stegeman, J.J. and Hahn, M.E., 2008. Chapter 7: Organic Pollutants: Presence and Effects in Humans and Marine Animals. In: P. Walsh, S. Smith, L. Fleming, H. Solo-Gabriele and W. Gerwick (Editors), Oceans and Human Health: Risks and Remedies from the Seas. Elsevier B.V., pp. 121-144.

Rose, J.M., R.J. Gast, A. Bogomolni, J.C. Ellis, B. Lentell, K. Touhey. M. Moore, In press. Occurrence and patterns of antibiotic resistance in vertebrates off the Northeastern United States coast. FEMS Microbiology Ecology.

Shimeta, J., Gast, R.J. and Rose, J.M., 2007. Community structure of marine sedimentary protist in relation to flow and grain size. Aquatic Microbial Ecology, 48: 91-104.

Sinigalliano, C.D., M. L. Gidley, T. Shibata, D. Whitman, T. H. Dixon, E. Laws, A. Hou, D. Bachoon, L. Brand, L. Amaral-Zettler, R. J. Gast, G. F. Steward, O. D. Nigro, R. Fujioka, W. Q. Betancourt, G. Vithanage, J. Mathews, L. E. Fleming, and H. M. Solo-Gabriele, 2007. Impacts of Hurricane Katrina on the Microbial Landscape of the New Orleans Area. Proceedings of the National Academy of Sciences of the United States of America, 104(21): 9029-9034.

Smith, K.W., McGillicuddy, D.J. and Lynch, D.R., In press. Parameter estimation using an ensemble smoother: the effect of the circulation in biological estimation. Journal of Marine Systems.

Sogin, M.L., H.G. Morrison, J.A. Huber, D.M. Welch, S.M. Huse, P.R. Neal, J.M. Arrieta, and G.J. Herndl, 2006. Microbial diversity in the deep sea and the underexplored "rare biosphere". Proceedings of the National Academy of Sciences of the United States of America, 103(32): 12115-12120.

Stewart, J.R., Gast, R.J., Fujioka, R.S., Solo-Gabriele, H.M., Meschke, J.S., Amaral-Zettler, L.A., del Castillo, E., Polz, M.F., Collier, T.K., Strom, M.S., Sinigalliano, C.D., Moeller, P., Holland, A.F., 2008. The coastal environment and human health: microbial indicators, pathogens, sentinels and reservoirs. Environmental Health, 7(Suppl 2:S3).

Stock, C.A., McGillicuddy, D.J., Anderson, D.M., Solow, A.M. and Signell, R.P., 2007. Blooms of the toxic dinoflagellate Alexandrium fundyense in the western Gulf of Maine in 1993 and 1994: A comparative modeling study. Continental Shelf Research, 27: 2486-2512.

Stocker, R., Seymour, J.R., Samadani, A., Hunt, D.E. and Polz, M.F., 2008. Rapid chemotactic response enables marine bacteria to exploit ephemeral microscale nutrient patches. Proceedings of the National Academy of Sciences, 105(11): 4209-4214.

Thompson, J.R., 2005. Emergent Patterns of Diversity and Dynamics in Natural Populations of Planktonic Vibrio Bacteria, Ph.D. Thesis, MIT/WHOI Joint Program, Cambridge, MA.

Thompson, J.R., Marcelino, L.A. and Polz, M., 2005. Diversity, sources, and detection of human bacterial pathogens in the marine environment. In: S. Belkin (Editor), Oceans and Health: Pathogens in the Marine Environment. Springer, New York, pp. 29-68.

Thompson, J.R. and Polz, M., 2006. Dynamics of Vibrio populations and their role in environmental nutrient cycling. In: F.L. Thompson, B. Austin and J. Swings (Editors), The Biology of Vibrios. ASM Press, pp. 190-203.

Turnbaugh, P.J., M. Hamady, T. Yatsunenko, B.L. Cantarel, A. Duncan, R.E. Ley, M.L. Sogin, W.J.Jones, B.A. Roe, J.P. Affourtit, M.Egholm, B. Henrissat, A.C. Heath, R. Knight and J.I. Gordon, in press. A core gut microbiome in obese and lean twins. Nature.

Weigele, P.W., Pope, W. H., Pedulla, M. L., Houtz, J. M., Smith, A. L., King, J., Hatfull, G., Lawrence, J. G., Hendrix, R. W, 2007. Genomic and structural analysis of Syn9, a cyanophage infecting marine Prochlorococcus and Synechococcus. Environ Microbiol, 9: 1675-1695.

Xu, J., A.Y.T. Ho, K. Yin, X. Yuan, D.M. Anderson, P.J. Harrison, 2008. Temporal and spatial variations in nutrient stoichiometry and regulation of phytoplankton biomass in Hong Kong waters: Influence of the Pearl River outflow and sewage inputs. Marine Pollution Bulletin, 57: 335-348.

Last updated: July 29, 2015