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WHOI Sea Grant's Online Publications Catalog

Oceanography: Biological


Biomechanics of North Atlantic Right Whale Bone: Mandibular Fracture as a Fatal Endpoint for Blunt Vessel-Whale Collision Modeling
Only available on loan from the National Sea Grant Library
Campbell-Malone, R.P.
Ph.D. Thesis, Massachusetts Institute of Technology/Woods Hole Oceanographic Institution Joint Program in Oceanography/Applied Ocean Science and Engineering, 257 pp., 2007 WHOI-X-07-001

Ethical and Welfare Considerations when using Cephalopods as Experimental Animals
Also available as a PDF -- click here.
Moltschaniwskyj, N.A., K. Hall, M.R. Lipinski, J.E.A.R. Marian, M. Nishiguchi, M. Sakai, D.J. Shulman, B. Sinclair, D.L. Sinn, M. Staudinger, R. Van Gelderen, R. Willanueva, and K. Warnke
Rev Fish Biol Fisheries, Vol. 17, pp. 455-476, 2007 WHOI-R-07-012

Effects of Turbulence-mediated Larval Behavior on Larval Supply and Settlement in Tidal Currents
Also available as a PDF -- click here.
Fuchs, H.L., M.G. Neubert, and L.S. Mullineaux
Limnol. Oceanogr., Vol. 52, No. 3, pp. 1156-1165, 2007 WHOI-R-07-009

Ecological Observations on the Colonial Ascidian Didemnum sp. in a New England Tide Pool Habitat
Also available as a PDF -- click here.
Valentine, P.C., M.R. Carman, D.S. Blackwood, and E.J. Heffron
Journal of Experimental Marine Biology and Ecology, Vol. 342, pp. 109-121, 2007 WHOI-R-07-001

Benthic Foraminifera Associated with the Invasive Ascidian, Didemnum sp. A
Also available as a PDF -- click here.
Carman, M.R.
Journal of Experimental Marine Biology and Ecology, Vol. 342, pp. 147-153, 2007 WHOI-R-07-002

Water Quality, Nitrogen Pollution, and Ascidian Diversity in Coastal Waters of Southern Massachusetts, USA
Also available as a PDF -- click here.
Carman, M.R., S.G. Bullard, and J.P. Donnelly
Journal of Experimental Marine Biology and Ecology, Vol. 342, pp. 175-178, 2007 WHOI-R-07-003

Biophysical Coupling Between Turbulence, Veliger Behavior, and Larval Supply
Only available on loan from the National Sea Grant Library
Fuchs, H.L.
Ph.D. Thesis, Massachusetts Institute of Technology/Woods Hole Oceanographic Institution Joint Program in Oceanography/Applied Ocean Science and Engineering, 104 pp., 2005 WHOI-X-05-002

Isolation and Characterization of Two Cytochrome P450 Aromatase Forms in Killifish (Fundulus heteroclitus): Differential Expression in Fish from Polluted and Unpolluted Environments
Greytak, S.R., D. Champlin, and G.V. Callard
Aquatic Toxicology, Vol. 71, pp. 371-389, 2005 WHOI-R-05-001

Characterization of a Cetacean Aromatase (CYP19) and the Phylogeny and Functional Conservation of Vertebrate Aromatase
Also available as a PDF -- click here.
Wilson, J.Y., A.G. McArthur, and J.J. Stegeman
General and Comparative Endocrinology, Vol. 140, pp. 74-83, 2005 WHOI-R-05-002

International Invasive Sea Squirt Conference: Program and Brief Abstracts
Only available on loan from the National Sea Grant Library
Whitlach, B. (ed.)
59 pp., 2005 WHOI-W-05-001

Gut-Associated Microbial Symbionts of the Marsh Fiddler Crab, Uca Pugnax
Only available on loan from the National Sea Grant Library
Gulmann, L.K.
Ph.D. Thesis, Massachusetts Institute of Technology/Woods Hole Oceanographic Institution Joint Program in Oceanography/Applied Ocean Science and Engineering, 159 pp., 2004 WHOI-X-04-001

Salt Marshes: Biological Controls of Food Webs in a Diminishing Environment
Valiela, I., D. Rutecki, and S. Fox
Journal of Experimental Marine Biology and Ecology, Vol. 300, pp. 131-159, 2004 WHOI-R-04-003

Induction of Cetacean Cytochrome P4501A1 by b-Naphthoflavone Exposure of Skin Biopsy Slices
Also available as a PDF -- click here.
Godard, C. A.J., R.M. Smolowitz, J.Y. Wilson, R.S. Payne, and J.J. Stegeman
Toxicological Sciences, Vol. 80, pp. 268-275, 2004 WHOI-R-04-006

Scanning Electron Microscopy Investigation of Epizootic Lobster Shell Disease in Homarus americanus
Hsu, A.C. and R.M. Smolowitz
Biol. Bull., Vol. 205, pp. 228-230, 2003 WHOI-R-03-003

Bacterial Assemblages Involved in the Development and Progression of Shell Disease in the American Lobster
Chistoserdov, A., R. Smolowitz, and A. Hsu
In: Proceedings of the Third Long Island Sound Lobster Health Symposium held March 7, 2003, pp. 61-64, 2003 WHOI-R-03-004

Cytochrome P450 1A1 and Aromatase (CYP19) in Cetaceans: Enzyme Expression and Relationship to Contaminant Exposure
Only available on loan from the National Sea Grant Library
Wilson, J.Y.
Ph.D. Thesis, Massachusetts Institute of Technology/Woods Hole Oceanographic Institution Joint Program in Oceanography/Applied Ocean Science and Engineering, 260 pp., 2003 WHOI-X-03-003

Mark-Recapture Statistics and Demographic Analysis
Only available on loan from the National Sea Grant Library
Fujiwara, M.
Ph.D. Thesis, Massachusetts Institute of Technology/Woods Hole Oceanographic Institution Joint Program in Oceanography/Applied Ocean Science and Engineering, 138 pp., 2002 WHOI-X-02-001

cDNA Cloning of an Aryl Hydrocarbon Receptor from Baikal Seals (Phoca sibirica)
Kim, E.-Y., M.E. Hahn, H. Iwata, S. Tanabe, and N. Miyazaki
Marine Environmental Research, 5 pp., 2002 WHOI-R-02-004

Techniques for the Identification of Bivalve Larvae
Garland, E.D. and C.A. Zimmer
Marine Ecology Progress Series, Vol. 225, pp. 299-310. 2002 WHOI-R-02-003

Biomarkers and Bioassays for Detecting Dioxin-like Compounds in the Marine Environment
Hahn, M.E.
Elsevier, The Science of the Total Environment, Vol. 289, pp. 49-69. 2002 WHOI-R-02-001

cDNA Cloning and Characterization of an Aryl Hydrocarbon Receptor from the Harbor Seal (Phoca vitulina): A Biomarker of Dioxin Susceptibility
Kim, E.-Y. and M.E. Hahn
Elsevier, Aquatic Toxicology, Vol. 58, pp. 57-73, 2002 WHOI-R-02-002

Development of an Acanthamoeba-specific Reverse Dot-Blot and the Discovery of a New Ribotype
Gast, R.J.
J. Eukaryot. Microbiol., Vol. 48, No. 6, pp. 609-615, 2001 WHOI-R-01-009

cDNA Cloning and Characterization of a High Affinity Aryl Hydrocarbon Receptor in a Cetacean, the Beluga, Delphinapterus leucas
Jensen, B.A. and M.E. Hahn
Toxicological Sciences, Vol. 64, pp. 41-56, 2001 WHOI-R-01-007

Demography of the Endangered North Atlantic Right Whale
Fujiwara, M. and H. Caswell
Nature, Vol. 414, pp. 537-541, 2001 WHOI-R-01-005

Habitat and Diet of the Non-native Crab Hemigrapsus sanguineus in Southeastern New England
Ledesma, M.E. and N.J. O'Connor
Northeastern Naturalist, Vol. 8, No. 1, pp. 63-78, 2001 WHOI-R-01-002

Identification of Cytochrome P450 1B-like Sequences in Two Teleost Fish Species (Scup, Stenotomus chrysops and Plaice, Pleuronectes platessa) and in a Cetacean (Striped Dolphin, Stenella coeruleoalba)
Godard, C.A.J., M.J. Leaver, M.R. Said, R.L. Dickerson, S. George, and J.J. Stegeman
Marine Environmental Research, Vol. 50, pp. 7-10, 2000 WHOI-R-00-008

Cellular Localization of CYP3A Proteins in Various Tissues from Pilot Whale (Globicephala melas)
Celander, M.C., M.J. Moore, and J.J. Stegeman
Environmental Toxicology and Pharmacology, Vol. 8, pp. 245-253, 2000 WHOI-R-00-009

Identification, Functional Characterization, and Regulation of a New Cytochrome P450 Subfamily, the CYP2Ns
Oleksiak, M.F., S. Wu, C. Parker, S.I. Karchner, J.J. Stegeman, and D.C. Zeldin
The Journal of Biological Chemistry, Vol. 275, No. 4, pp. 2312-2321, 2000 WHOI-R-00-010

The Ah Receptor: Comparative Biochemistry and Possible Role as a Biomarker of Susceptibility to PHAH
Hahn, M.E., B.A. Jensen, and E.-Y. Kim
In: Endocrine Disruptors in the Marine Environment: Impacts on Marine Wildlife and Human Health. Proceedings of the Atlantic Coast Contaminants Workshop, pp. 120-126, 2000 WHOI-R-00-012
Halogenated aromatic hydrocarbons (HAHs) are ubiquitous contaminants of the global environment. Some HAHs, especially the so-called planar HAH (PHAH), are highly toxic to many vertebrate species. In this paper, the authors present and discuss the hypothesis that the sensitivity of marine mammals to PHAH can be predicted from an understanding of the comparative biochemistry of proteins involved in the molecular mechanisms of PHAH action.

Single-step Species Identification of Bivalve Larvae Using Multiplex Polymerase Chain Reaction
Hare, M.P., S.R. Palumbi, and C.A. Butman
Marine Biology (Springer-Verlag), Vol. 137, pp. 953-961, 2000 WHOI-R-00-007

Characterization of an Aryl Hydrocarbon Receptor from a Cetacean: An Approach for Assessing Contaminant Susceptibility in Protected Species
Only available on loan from the National Sea Grant Library
Jensen, B.A.
Ph.D. Thesis, Massachusetts Institute of Technology/Woods Hole Oceanographic Institution Joint Program in Oceanography/Applied Ocean Science and Engineering, 199 pp., 2000 WHOI-Y-00-002

Mechanisms of Action for Aryl Hydrocarbon Receptor Ligands in the PLHC-1 Cell Line
Only available on loan from the National Sea Grant Library
Hestermann, E.V.
Ph.D. Thesis, Massachusetts Institute of Technology/Woods Hole Oceanographic Institution Joint Program in Oceanography/Applied Ocean Science and Engineering, 193 pp., 2000 WHOI-Y-00-001

Relative Contributions of Affinity and Intrinsic Efficacy to Aryl Hydrocarbon Receptor Ligand Potency
Hestermann, E.V., J.J. Stegeman, and M.E. Hahn
Toxicology and Applied Pharmacology, Vol. 168, pp. 160-172, 2000 WHOI-R-00-002

Serum Alters the Uptake and Relative Potencies of Halogenated Aromatic Hydrocarbons in Cell Culture Bioassays
Hestermann, E.V., J.J. Stegeman, and M.E. Hahn
Toxicology Sciences, Vol. 53, pp. 316-325, 2000 WHOI-R-00-004

Cytochrome P4501A Induction and Porphyrin Accumulation in PLHC-1 Fish Cells Exposed to Sediment and Oil Shale Extracts
Huuskonen, S.E., A. Tuvikene, M. Trapido, K. Fent, and M.E. Hahn
Arch. Environ. Contam. Toxicol., Vol. 138, pp. 59-69, 2000 WHOI-R-00-003

Towards Molecular Understanding of Species Differences in Dioxin Sensitivity: Initial Characterization of Ah Receptor cDNAs in Birds and an Amphibian
Karchner, S.I., S.W. Kennedy, S. Trudeau, and M.E. Hahn
Marine Environmental Research, Vol. 50, pp. 51-56, 2000 WHOI-R-00-001

Molecular Biology and Biotechnology in Marine Toxicology
Hahn, M.E. and J.J. Stegeman
In: Opportunities for Environmental Applications of Marine Biology. Proceedings of the October 5-6, 1999, Workshop, pp. 112-125, 1999 WHOI-R-99-009
The presence of toxic chemicals in the marine environment has long been recognized as a potential threat to human health and to the health of the oceans. This paper presents the problem, challenges and research needs, as well as examples and approaches that will be essential to meeting the three objectives of research in marine toxicology: to understand, monitor, and predict the effects of contaminants.

Two Forms of Aryl Hydrocarbon Receptor Type 2 in Rainbow Trout (Oncorhynchus mykiss)
Abnet, C.C., R.L. Tanguay, M.E. Hahn, W. Heideman, and R.E. Peterson
The Journal of Biological Chemistry, Vol. 274, No. 21, pp. 15159-15166, 1999 WHOI-R-99-002

Molecular Cloning of CYP1A from the Estuarine Fish Fundulus heteroclitus and Pylogenetic Analysis of CYP1 Genes: Update with New Sequences
Morrison, H.G., E.J. Weil, s.I. Karchner, M.L. Sogin, and J.J. Stegeman
Comparative Biochemistry and Physiology, Part C, Vol. 121, pp. 231-240, 1998 WHOI-R-98-016

Research Update: Contaminants in the Marine Environment and their Effects on Marine Mammals
Helpful to educators and students.
WHOI Sea Grant
Focal Points, 3 pp., 1998 WHOI-G-98-010
Also available online: click here

Endocrine Disruption in Wildlife Populations
Helpful to educators and students.
WHOI Sea Grant
Focal Points, 2 pp., 1998 WHOI-G-98-005
Also available online: click here

Planktonic Feeding and Evolutionary Significance of the Lobate Body Plan Within the Ctenophora
Costello, J.H. and R. Coverdale
Biol. Bull., Vol. 195, pp. 247-248, 1998 WHOI-R-98-011

From Carbon Flux to Regime Shift
Steele, J.H.
Fish. Oceanogr., Vol. 7, No. 3/4, pp. 176-181, 1998 WHOI-R-98-010
The basic assumption in biological oceanography -- and in GLOBEC -- is that physical forcing at a wide range of space and time scales determines most of the dynamics of marine populations. This has been very productive and provides the global context for GLOBEC and other programmes. How far can it take us in the future; and, alternatively, what role is played by community interactions?

A Fish Hepatoma Cell Line (PLHC-1) as a Tool to Study Cytotoxicity and CYP1A Induction and Properties of Cellulose and Wood Chip Extracts
Huuskonen, S.E., M.E. Hahn, and P. Lindstrom-Seppa
Chemosphere, Vol. 36, No. 14, pp. 2921-2932, 1998 WHOI-R-98-012

Chronic Retene Exposure Causes Sustained Induction of CYP1A Activity and Protein in Rainbow Trout (Oncorhynchus mykiss)
Fragoso, N.M., J.L. Parrott, M.E. Hahn, and P.V. Hodson
Environmental Toxicology and Chemistry, Vol. 17, No. 11, pp. 2347-2353, 1998 WHOI-R-98-013

Comparison of Two Bioassays, a Fish Liver Cell Line (PLHC-1) and a Midge (Chironomus riparius), in Monitoring Freshwater Sediments
Huuskonen, S.E., T.E. Ristola, A. Tuvikene, M.E. Hahn, J. V.K. Kukkonen, and P. Lindstrom-Seppa
Aquatic Toxicology, Vol. 44, pp. 47-67, 1998 WHOI-R-98-014

Induction of CYP1A and Porphyrin Accumulation in Fish Hepatoma Cells (PLHC-1) Exposed to Sediment or Water from a PCB-Contaminated Lake (Lake Kernaala, Finland)
Huuskonen, S., K. Koponen, O. Ritola, M. Hahn, and P. Lindstrom-Seppa
Marine Environmental Research, Vol. 46, No. 1-5, pp. 379-384, 1998 WHOI-R-98-015

Incorporating the Microbial Loop in a Simple Plankton Model
Steele, J.H.
Proc. R. Soc. Lond., B, Vol. 265, pp. 1771-1777, 1998 WHOI-R-98-009

Linking Nitrogen in Estuarine Producers to Land-Derived Sources
McClelland, J.W. and I. Valiela
Limnol. Oceanogr., Vol. 43, No. 4, pp. 577-585, 1998 WHOI-R-98-005

Changes in Food Web Structure Under the Influence of Increased Anthropogenic Nitrogen Inputs to Estuaries
McClelland, J.W. and I. Valiela
Marine Ecology Progress Series, Vol. 168, pp. 259-271, 1998 WHOI-R-98-004

Detection and Quantification of Alkaline Phosphatase in Single Cells of Phosphorus-Starved Marine Phytoplankton
Gonzalez-Gil, S., B.A. Keafer, R.V.M. Jovine, A. Aguilera, S. Lu, and D.M. Anderson
Marine Ecology Progress Series, Vol. 164, pp. 21-35, 1998 WHOI-R-98-003

Behavioral Ecology of Coral Reef Fishes at Spawning Aggregation Sites
Only available on loan from the National Sea Grant Library
Sancho, G.
Ph.D. Thesis, Massachusetts Institute of Technology/Woods Hole Oceanographic Institution Joint Program in Oceanography/Applied Ocean Science and Engineering, 254 pp., 1998 WHOI-X-98-004

Diversity and Characterization of Novel Cytochrome P450 2 Genes in the Marine Teleost Fundulus Heteroclitus
Only available on loan from the National Sea Grant Library
Oleksiak, M.F.
Ph.D. Thesis, Massachusetts Institute of Technology/Woods Hole Oceanographic Institution Joint Program in Oceanography/Applied Ocean Science and Engineering, 205 pp., 1998 WHOI-Y-98-003

Feminization in Common Terns (Sterna hirundo): Relationship to Persistent Organic Contaminants
Only available on loan from the National Sea Grant Library
Hart, C.A.
Ph.D. Thesis, Massachusetts Institute of Technology/Woods Hole Oceanographic Institution Joint Program in Oceanography/Applied Ocean Science and Engineering, 254 pp., 1998 WHOI-Y-98-002

Life History Traits and Population Processes in Marine Bivalve Molluscs
Only available on loan from the National Sea Grant Library
Ripley, B.J.
Ph.D. Thesis, Massachusetts Institute of Technology/Woods Hole Oceanographic Institution Joint Program in Oceanography/Applied Ocean Science and Engineering, 181 pp., 1998 WHOI-Y-98-001

Lake Kernaala Sediments and Waters Contain Inducers of CYP1A and Porphyrins
Huuskonen, S., K. Koponen, O. Ritola, M. Hahn, and P. Lindstrom-Seppa
Proceedings of the Third Finnish Conference of Environmental Sciences, May 9-10, 1997, pp. 139-142, 1997 WHOI-R-97-009

Nitrogen-Stable Isotope Signatures in Estuarine Food Webs: A Record of Increasing Urbanization in Coastal Watersheds
McClelland, J.W., I. Valiela, and R.H. Michener
Limnol. Oceanogr., Vol. 42, No. 5, pp. 930-937, 1997 WHOI-R-97-005

Measuring Diversity of Planktonic Larvae: Catch 'Em (and Identify 'Em) If You Can
Garland, E.D. and C.A. Butman
Oceanus, Vol. 39, No. 1, pp. 12, 1996 WHOI-R-96-014

Utilization of Microbial Organic Aggregates by Bay Scallops, Argopecten irradians (Lamarck)
Alber, M. and I. Valiela
Journal of Experimental Marine Biology and Ecology, Vol. 195, pp. 71-89, 1996 WHOI-R-96-008

Rapid Assessment of Induced Cytochrome P4501A Protein and Catalytic Activity in Fish Hepatoma Cells Grown in Multiwell Plates: Response to TCDD, TCDF, and Two Planar PCBs
Hahn, M.E., B.L. Woodward, J.J. Stegeman, and S.W Kennedy
Environmental Toxicology and Chemistry, Vol. 15, No. 4, pp. 582-591, 1996 WHOI-R-96-006

Cytochromes P450 (CYP) in the Poeciliopsis lucida Hepatocellular Carcinoma Cell Line (PLHC-1): Dose-and Time-Dependent Glucocorticoid Potentiation of CYP1A Induction without Induction of CYP3A
Celander, M., M.E. Hahn, and J.J. Stegeman
Archives of Biochemistry and Biophysics, Vol. 329, No. 1, pp. 113-122, 1996 WHOI-R-96-005

Uroporphyrin Accumulation Associated with Cytochrome P4501A Induction in Fish Hepatoma Cells Exposed to Aryl Hydrocarbon Receptor Agonists, Including 2,3,7,8-Tetrachlorodibenzo-p-dioxin and Planar Chlorobiphenyls
Hahn, M.E. and K. Chandran
Archives of Biochemistry and Biophysics, Vol. 329, No. 2, pp. 163-174, 1996 WHOI-R-96-004

Lipoproteins and Heat Shock Proteins as Measures of Reproductive Physiology in the Soft Shell Clam Mya arenaria
Only available on loan from the National Sea Grant Library
Clayton, M.E.
Ph.D. Thesis, Massachusetts Institute of Technology/Woods Hole Oceanographic Institution Joint Program in Oceanography/Applied Ocean Science and Engineering, 195 pp., 1996 WHOI-X-96-001

Organic Aggregates in Detrital Food Webs: Incorporation by Bay Scallops Argopecten irradians
Alber M. and I. Valiela
Marine Ecology Progress Series, Vol. 121, pp. 117-124, 1995 WHOI-R-95-002

Midgut-gland Development During Early Life-history Stages of the American Lobster Homarus americanus
Biesiot, P.M. and J.E. McDowell
Journal of Crustacean Biology, Vol. 15, No. 4, pp. 679-685, 1995 WHOI-R-95-003

Tetrachlorobiphenyl Metabolism, Toxicity, and Regulation of Cytochrome P450 Expression in a Marine Teleost Fish
White, R.D.
Ph.D. Thesis, Massachusetts Institute of Technology/Woods Hole Oceanographic Institution Joint Program in Oceanography/Applied Ocean Science and Engineering, 2 pp. (abstract only), 1995 WHOI-X-95-001

Biochemical Composition of Organic Aggregates Produced from Marine Macrophyte-derived Dissolved Organic Matter
Alber, M. and I. Valiela
Limnol. Oceanogr., Vol. 39, No. 3, pp. 717-723, 1994 WHOI-R-94-002

Incorporation of Organic Aggregates by Marine Mussels
Alber, M. and I. Valiela
Marine Biology, Vol. 121, pp. 259-265, 1994 WHOI-R-94-007

Production of Microbial Organic Aggregates from Macrophyte-derived Dissolved Organic Material
Alber, M. and I. Valiela
Limnol. Oceanog., Vol. 39, No. 1, pp. 37-50, 1994 WHOI-R-94-010

Social Behaviour of Captive Belugas, Delphinapterus leucas
Recchia, C.A.
Ph.D. Thesis, Massachusetts Institute of Technology/Woods Hole Oceanographic Institution Joint Program in Oceanography/Applied Ocean Science and Engineering, 1 p. (abstract only), 1994 WHOI-X-94-001

Seasonal Distribution of Nutrients and Primary Productivity on the Eastern Continental Shelf of Venezuela as Influenced by the Orinoco River
Bonilla, J., W. Senior, J. Bugden, O. Zafiriou, and R. Jones
Journal of Geophysical Research, Vol. 98, No. C2, pp. 2245-2257, 1993 WHOI-R-93-005

Getting to Why: Understanding Leukemia in Soft-shell Clams
Crago T.I.
Nor'easter, Vol. 5, No. 1, pp. 20-23, 1993 WHOI-R-93-007

Marine Biotechnology: Sea Grant's Role
Crago, T.I.
Nor'easter, Vol. 5, No. 2, pp. 28-31, 1993 WHOI-R-93-014

Application of rRNA-based Probes for Observing Marine Nanoplanktonic Protists
Lim, E.L., L.A. Amaral, D.A. Caron, and E.F. DeLong
Applied and Environmental Microbiology, May 1993, pp. 1647-1655, 1993 WHOI-R-93-004

Growth Dynamics of Juvenile Copepods Exposed to Simulated Patches of Food
Only available on loan from the National Sea Grant Library
Shumate, A.M.
Bachelor of Arts with Honors in Biological Sciences Thesis, Wellesley College, 33 pp., 1993 WHOI-X-93-001

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