1. Browne, R.A. and K.M. Halanych. 1989. Competition between sexual and parthenogenetic Artemia: A reevaluation. Crustaceana 57: 57-71.

2. Halanych, K.M. 1991. 5S ribosomal RNA sequence inappropriate for phylogenetic reconstruction. Molecular Biology and Evolution 8: 249-253.

3. Halanych, K.M. 1993. Suspension feeding and the lophophore-like apparatus of the pterobranch hemichordate Rhabdopleura normani. Biological Bulletin 185: 417-427.

4. Halanych, K.M. 1995. The phylogenetic position of the pterobranch hemichordates based on 18S rDNA sequence data. Molecular Phylogenetics and Evolution 4: 72-76.

5. Halanych, K.M., J. Bachelor, A.M. Aquinaldo, S. Liva, D.M. Hillis, and J.A. Lake. 1995. 18S rDNA evidence that the lophophorates are protostome animals. Science 267: 1641-1643. (cover).

6. Halanych, K.M. 1996. Convergence in the feeding apparatuses of lophophorates and pterobranch hemichordates revealed by 18S rDNA. Biological Bulletin 190: 1-5.

7. Robinson, T.J., A.D. Bastos, K.M. Halanych, and B. Herzig. 1996. Mitochondrial DNA sequence relationships of the extinct blue antelope, Hippotragus leucophaeus. Naturwissenschaften 83:178-182.

8. Halanych, K.M. 1996. Testing hypotheses of chaetognath origins; long branches revealed by 18S rDNA. Systematic Biology 45:223-246. (cover).

9. Halanych, K.M., and T.J. Robinson. 1997. Phylogenetic relationships of cottontails (Sylvilagus, Lagomorpha): Congruence of 12S rRNA and cytogenetic data. Molecular Phylogenetics and Evolution 7: 294-302.

10. Black, M.B., K.M. Halanych, P.A.Y. Maas, W. R. Hoeh, J. Hashimoto, D. Desbruyères, R.A. Lutz, and R.C. Vrijenhoek. 1997. Molecular systematics of vestimentiferan tubeworms from hydrothermal vents and cold-water seeps. Marine Biology 130: 141-149.

11. Halanych, K.M. 1998. Lagomorphs misplaced by more data and fewer taxa. Systematic Biology 47: 138-146.

12. Halanych, K. M. 1998. Considerations for reconstructing metazoan history: Signal, resolution, and hypothesis testing. American Zoologist. 38: 929-941.

13. Halanych, K.M., R.A. Lutz, and R.C. Vrijenhoek. 1998. Evolutionary origins and age of vestimentiferan tube worms. Cahiers de Biologie Marine 39: 355-358.

14. Halanych, K.M., and T.J. Robinson. 1999. The utility of cytochrome b and 12S rDNA data for phylogeny reconstruction of leporid (Lagomorpha) genera. Journal of Molecular Evolution. 48: 369-379.

15. Halanych, K.M., J.R. Demboski, B.J. van Vuuren, D.R. Klein, and J.A. Cook. 1999. Cytochrome b phylogeny of North American hares and jackrabbits (Lepus, Lagomorpha) and the effects of mutational saturation in outgroup taxa. Molecular Phylogenetics and Evolution. 11: 213-221.

16. Shank, T.M., M.B. Black, K.M. Halanych, R.A. Lutz, and R.C. Vrijenhoek. 1999. Miocene radiation of deep-sea hydrothermal vent shrimp (Caridea: Bresiliidae): evidence from mitochondrial Cytochrome Oxidase subunit I. Molecular Phylogenetics and Evolution. 13: 244-254.

17. Halanych, K.M. 1999. Metazoan phylogeny and the shifting comparative framework. In Roubos, Wendelaar Bonga, Vaudry & De Loof, (Eds.), Recent Developments in Comparative Endocrinology and Neurobiology. Pp. 3-7.

18. Dahlgren, T. G., J. R. Weinberg, K.M. Halanych. 2000. Phylogeography of the Ocean Quahog (Arctica islandica): influences of paleoclimate on genetic diversity and species range. Marine Biology 137:487-495.

19. Halanych, K. M., and Y. Passamaneck. 2001. A brief review of metazoan phylogeny and future prospects in Hox-research. American Zoologist 41: 629-639.

20. Halanych, K.M., Feldman, R.A., and R.C. Vrijenhoek. 2001. Molecular evidence that Sclerolinum brattstromi is closely related to vestimentiferans, not frenulate pogonophorans (Siboglinidae, Annelida). Biological Bulletin 201: 65-75.

21. Dahlgren, T. G. , Åkesson, B., Schander, C., Halanych, K. M., and Sundberg, P. In press. Molecular phylogeny of the model annelid Ophryotrocha. Biological Bulletin.

Other Scientific Comments:

1. Halanych, K.M., J. Bachelor, A.M. Aquinaldo, S. Liva, D.M. Hillis, and J.A. Lake. 1995. 18S rDNA from Lophophorates. Science 270: 1852. (Technical comment related to publication #5.)

2. Halanych, K.M., J. Bachelor, A.M. Aquinaldo, S. Liva, D.M. Hillis, and J.A. Lake. 1996. Lophophorate phylogeny. Science 272:283. (Technical comment related to publication #5.)

3. McHugh, D. and K.M. Halanych. 1998. Evolutionary relationships of metazoan phyla: Advances, problems, and approaches. American Zoologist. 38: 813-817. (Introduction to symposium).

4. Eernisse, D. J. and K. M. Halanych. 1999. Tree of Life Metazoan Home page. http://Ag.Arizona.Edu/tree/eukaryotes/animals/animals.html

5. Halanych, K.M., M. Tieger, G. D. O'Mullan, R. A. Lutz, and R. C. Vrijenhoek. 1999. Brief description of biological communities at 7^oS on the Eastern Pacific Rise. InterRidge 8: 23-27. (gray lit.).