High Throughput Multiple Alignment: MUSCLE |
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| Related Files |
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| There are four files and a link here. In addition, I will also add summaries of the papers, when I find the time:
- Lecture 1 MUSCLE (Download pdf from "Related Files"). The lecture has instructions on how to install the program, and discusses simple commands.
- The MUSCLE Homepage.
- The short foundation paper: Edgar, R.E., 2004. "MUSCLE: Multiple Sequence Alignment with High Accuracy and High Throughput," Nuc. Acids Research, 32(5): 1792-1797.
- The long foundation paper: Edgar, R.C., 2004. "MUSCLE: A Multiple Sequence Alignment Method with Reduced Time and Space Complexity," BMC Bioinformatics, 5 : 113.
- A comparison paper, Edgar R.C. and S. Batzoglou, 2006. "Multiple Sequence Alignment," Current Opinion in Structural Biology, 16 : 368-373. (This paper compares: CLUSTALW, T-COFFEE, MUSCLE, ProbCons, DIALIGN, MAFFT, and ProDA.)
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